RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	DEFB135	Q30KP9	77 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	PATE2	Q6UY27	113 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR5C1	Q8NGR4	320 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	LINC00052	Q96N35	136 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	ARV1	Q9H2C2	271 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	DHRS4-AS1	Q9P1J3	65 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	C3orf84	H3BNL1	204 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	MPDU1	O75352	247 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	RPL29	P47914	159 aa	Known RBP	4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	FGL1	Q08830	312 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	C10orf113	Q5VZT2	155 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	MIC13	Q5XKP0	118 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	MORN3	Q6PF18	240 aa	Predicted RBP	4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	LINC00305	Q7Z4B0	112 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR1L4	Q8NGR5	311 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	MUC7	Q8TAX7	377 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	TMEM37	Q8WXS4	190 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	EDA2R	Q9HAV5	297 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	SLC39A9	Q9NUM3	307 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228	MBD2	Q9UBB5	411 aa		4.89	□□□□□ -1.63
SDCBP-208	ENST00000520228		H3BMM0	161 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	ZNF253	O75346	499 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	GIG44	P09565	113 aa	Predicted RBP	4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	HLA-DRB4	P13762	266 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	RPL12	P30050	165 aa	Known RBP	4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	B2M	P61769	119 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	NUTF2	P61970	127 aa	Known RBP	4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	OXA1L	Q15070	435 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	TMEM41B	Q5BJD5	291 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	EBLN2	Q6P2I7	272 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	FOXI2	Q6ZQN5	318 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	BPIFA4P	Q86YQ2	179 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	ZNF709	Q8N972	641 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR11H7	Q8NGC8	314 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	LRRC20	Q8TCA0	184 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	PFDN5	Q99471	154 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	ATP5S	Q99766	215 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	RARRES2	Q99969	163 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	NPCDR1	Q9BY65	106 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	RPRM	Q9NS64	109 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	HSPB11	Q9Y547	144 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	PXMP4	Q9Y6I8	212 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	HLA-DRB4	X5D2U9	266 aa		4.88	□□□□□ -1.63
SDCBP-208	ENST00000520228	IGHV3OR16-12	A0A075B7B8	117 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	TRAV8-2	A0A0B4J237	113 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	TRAV5	A0A0B4J249	113 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	IFNA5	P01569	189 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	GIP	P09681	153 aa	Predicted RBP	4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	DEFB1	P60022	68 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	SST	P61278	116 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	GDF5OS	Q5U4N7	250 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	SPATA31B1P	Q5VZV4	182 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR4B1	Q8NGF8	309 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR11H2	Q8NH07	326 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	SCGB1C1	Q8TD33	95 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	ASB13	Q8WXK3	278 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	SMIM3	Q9BZL3	60 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	WDR61	Q9GZS3	305 aa	Known RBP	4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	SAV1	Q9H4B6	383 aa	Predicted RBP	4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	KCNIP2	Q9NS61	270 aa		4.87	□□□□□ -1.63
SDCBP-208	ENST00000520228	HUWE1	Q7Z6Z7	4374 aa	Known RBP	4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	TRAV9-2	A0A087WT02	112 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228		A0A0J9YX75	114 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228		A0A0U1RRA0	63 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	C17orf112	F2Z3M2	114 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228		F6UB75	175 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	MRPS12	O15235	138 aa	Known RBP	4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	SNRPC	P09234	159 aa	Known RBP	4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	GUK1	Q16774	197 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228		Q1RN00	199 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	GCSAML	Q5JQS6	135 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	CASC10	Q5T4H9	136 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	FAM78B	Q5VT40	261 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	ZFAND6	Q6FIF0	208 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	RNF182	Q8N6D2	247 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	ZNF738	Q8NE65	137 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228	XCL2	Q9UBD3	114 aa		4.86	□□□□□ -1.63
SDCBP-208	ENST00000520228		H3BQ15	152 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228		H3BTX0	84 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	PHOX2A	O14813	284 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	DUSP14	O95147	198 aa	Known RBP	4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	IGLC2	P0DOY2	106 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	CXCL2	P19875	107 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	FXYD7	P58549	80 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	PSG9	Q00887	426 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	PSG3	Q16557	428 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228		Q5BKY6	102 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	ATRAID	Q6UW56	229 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	LCN15	Q6UWW0	184 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	INO80E	Q8NBZ0	244 aa	Predicted RBP	4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	OR2T35	Q8NGX2	323 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	SLC50A1	Q9BRV3	221 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	WFDC1	Q9HC57	220 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	ZNF331	Q9NQX6	463 aa	Predicted RBP	4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	PRR34	Q9NV39	138 aa		4.85	□□□□□ -1.63
SDCBP-208	ENST00000520228	TRBV19	A0A075B6N1	114 aa		4.84	□□□□□ -1.63
SDCBP-208	ENST00000520228	FXYD6-FXYD2	A0A087WZ82	144 aa		4.84	□□□□□ -1.63
SDCBP-208	ENST00000520228	SLC17A3	O00476	420 aa		4.84	□□□□□ -1.63
SDCBP-208	ENST00000520228	DEFB4A	O15263	64 aa		4.84	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 101 ms