RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	PHOX2A	O14813	284 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	MIF	P14174	115 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	UBE2L3	P68036	154 aa	Known RBP	5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	HIST1H1A	Q02539	215 aa	Predicted RBP	5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	OR5I1	Q13606	314 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	COX19	Q49B96	90 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	TMUB2	Q71RG4	321 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	FAM24B	Q8N5W8	94 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	CMTM2	Q8TAZ6	248 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	RNF141	Q8WVD5	230 aa		5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	ZNF331	Q9NQX6	463 aa	Predicted RBP	5.5	□□□□□ -1.53
NR1I3-231	ENST00000512340	STAB2	Q8WWQ8	2551 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TRBV19	A0A075B6N1	114 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TRAV5	A0A0B4J249	113 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TRBV7-9	A0A0J9YWB2	115 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TEX48	A0A1B0GUV7	120 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TMEM189	A5PLL7	270 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	CCL25	O15444	150 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	IGKV3-20	P01619	116 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	IGLC2	P0DOY2	106 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	ATP6V0C	P27449	155 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	LEP	P41159	167 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	RAN	P62826	216 aa	Known RBP	5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	HERV-K104	P63124	156 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	C5orf47	Q569G3	176 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	CDPF1	Q6NVV7	123 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	MIR17HG	Q75NE6	70 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	HIST3H2BB	Q8N257	126 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	OR8A1	Q8NGG7	326 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	BLNK	Q8WV28	456 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	OVOL2	Q9BRP0	275 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	SSBP4	Q9BWG4	385 aa	Predicted RBP	5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	TMEM167B	Q9NRX6	74 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	XCL2	Q9UBD3	114 aa		5.49	□□□□□ -1.53
NR1I3-231	ENST00000512340	AGRN	O00468	2067 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	RNF222	A6NCQ9	220 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	FBLL1	A6NHQ2	334 aa	Known RBP	5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	UMAD1	C9J7I0	102 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340		K7EQM0	130 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	MRPS12	O15235	138 aa	Known RBP	5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	TSPAN13	O95857	204 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	CXorf1	O96002	111 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	INS	P01308	110 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	CNN1	P51911	297 aa	Known RBP	5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	GCSAML	Q5JQS6	135 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	TMEM78	Q5T7P6	136 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	RPL7L1	Q6DKI1	246 aa	Known RBP	5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	ALKAL2	Q6UX46	152 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	TMEM256	Q8N2U0	113 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	KCNRG	Q8N5I3	272 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	RNF182	Q8N6D2	247 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	MUC7	Q8TAX7	377 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	LINC00477	Q96M19	166 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	ZNF471	Q9BX82	626 aa	Predicted RBP	5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	SLC25A2	Q9BXI2	301 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	WFDC1	Q9HC57	220 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	ZNF586	Q9NXT0	402 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	URGCP-MRPS24	S4R325	110 aa		5.48	□□□□□ -1.53
NR1I3-231	ENST00000512340	TRAV26-1	A0A087WT03	109 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340		G3V3Q6	166 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340		H3BQ15	152 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	BCL2L11	O43521	198 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	HBE1	P02100	147 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	PYY	P10082	97 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	TPT1	P13693	172 aa	Known RBP	5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	ADCYAP1	P18509	176 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	ICAM4	Q14773	271 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	IQCJ	Q1A5X6	159 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	DPPA3	Q6W0C5	159 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	OR4C5	Q8NGB2	326 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	IGF2BP2-AS1	Q96M15	143 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	C20orf144	Q9BQM9	153 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	C11orf68	Q9H3H3	251 aa	Known RBP	5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	CST9L	Q9H4G1	147 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	RETN	Q9HD89	108 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	OTOR	Q9NRC9	128 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	RFNG	Q9Y644	331 aa		5.47	□□□□□ -1.53
NR1I3-231	ENST00000512340	IGHV3OR16-12	A0A075B7B8	117 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	TRAV8-2	A0A0B4J237	113 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	CTXND1	A0A1B0GTU2	59 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	RBAKDN	A6NC62	111 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340		F6UB75	175 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340		H3BTX0	84 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340		M0R036	132 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	SLC25A5	P05141	298 aa	Known RBP	5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	SEC11B	P0C7V7	166 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	GZMB	P10144	247 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	NDUFA6	P56556	154 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	RRN3P1	Q2M238	152 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	MORN5	Q5VZ52	161 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	IGFL4	Q6B9Z1	124 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	PRR27	Q6MZM9	219 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	DAZAP1	Q96EP5	407 aa	Known RBP	5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	FAM167A-AS1	Q96KT0	104 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	C20orf173	Q96LM9	149 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	C17orf77	Q96MU5	243 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	ODF3	Q96PU9	254 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	NDFIP1	Q9BT67	221 aa		5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	KLK5	Q9Y337	293 aa	Predicted RBP	5.46	□□□□□ -1.54
NR1I3-231	ENST00000512340	DNAH3	Q8TD57	4116 aa		5.46	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms