RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZNF586Q9NXT0 402 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 KLK5Q9Y337 293 aaPredicted RBP3.23□□□□□ -1.89
NUP54-206ENST00000508465 PXMP4Q9Y6I8 212 aa3.23□□□□□ -1.89
NUP54-206ENST00000508465 A0A087X0K7 114 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 NUPR2A6NF83 97 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 CRXO43186 299 aaPredicted RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 ATP6V1G1O75348 118 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 DUSP14O95147 198 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 MPC2O95563 127 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 IGLC2P0DOY2 106 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 PYYP10082 97 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 HTN3P15516 51 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 RPL12P30050 165 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 S100A7P31151 101 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 RPL29P47914 159 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 SEC61BP60468 96 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 B2MP61769 119 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 CYCSP99999 105 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 TMEM41BQ5BJD5 291 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 Q5BKY6 102 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 ZNF705AQ6ZN79 300 aaPredicted RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 MIR17HGQ75NE6 70 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 SH2D6Q7Z4S9 175 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 S100A7AQ86SG5 101 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 BPIFA4PQ86YQ2 179 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 BAP18Q8IXM2 172 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 EXOC3-AS1Q8N2X6 119 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 OR11H7Q8NGC8 314 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 OR8A1Q8NGG7 326 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 OR1L4Q8NGR5 311 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 LINC01587Q99440 93 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 TMEM208Q9BTX3 173 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 NPCDR1Q9BY65 106 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 C11orf68Q9H3H3 251 aaKnown RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 ZNF331Q9NQX6 463 aaPredicted RBP3.22□□□□□ -1.89
NUP54-206ENST00000508465 MBD2Q9UBB5 411 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 GOLT1BQ9Y3E0 138 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 TIMM9Q9Y5J7 89 aa3.22□□□□□ -1.89
NUP54-206ENST00000508465 DEFB131BA0A096LNP1 70 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 hDV102S1A0JD36 115 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 A8MTW9 85 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 M0R3E3 92 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 AMBPP02760 352 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 OR10J4P0C629 311 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 SPART-AS1P0CW21 52 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 CT45A10P0DMU9 189 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 FFAR4Q5NUL3 377 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 PAPPA-AS1Q5QFB9 102 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 FAM222AQ5U5X8 452 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 SAMD13Q5VXD3 122 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 RPP25LQ8N5L8 163 aaKnown RBP3.21□□□□□ -1.9
NUP54-206ENST00000508465 OR10J6PQ8NGY7 276 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 SCGB1C1Q8TD33 95 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 FAM167A-AS1Q96KT0 104 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 IGF2BP2-AS1Q96M15 143 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 ATG101Q9BSB4 218 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 SLC25A2Q9BXI2 301 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 MED28Q9H204 178 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 HSPB11Q9Y547 144 aa3.21□□□□□ -1.9
NUP54-206ENST00000508465 VPS13DQ5THJ4 4388 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 KMT2AQ03164 3969 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 ALMS1Q8TCU4 4167 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 TRBV19A0A075B6N1 114 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 TRAV10A0A0B4J240 114 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 TRAV12-3A0A0B4J271 114 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 SMIM9A6NGZ8 99 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 BOLA2-SMG1P6H3BVE0 249 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 HMGB3O15347 200 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 MPDU1O75352 247 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 PTTG1O95997 202 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 INSP01308 110 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 IFNA5P01569 189 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 HBE1P02100 147 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 NBEAP1P0C6P0 100 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 DEFB130BP0DP73 79 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 DEFB130AP0DP74 79 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 HIST1H1EP10412 219 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 RNASE4P34096 147 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 RANP62826 216 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 GUK1Q16774 197 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 RRN3P1Q2M238 152 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 FAM122CQ6P4D5 195 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 LCN15Q6UWW0 184 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 Q6ZQT7 251 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 FXYD5Q96DB9 178 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 PFDN5Q99471 154 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 ATP5SQ99766 215 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 VGLL1Q99990 258 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 NIPSNAP3BQ9BS92 247 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 PAXXQ9BUH6 204 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 WDR61Q9GZS3 305 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 AGPAT4-IT1Q9H0P7 198 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 OR51M1Q9H341 326 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 TMEM14CQ9P0S9 112 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 APLNQ9ULZ1 77 aa3.2□□□□□ -1.9
NUP54-206ENST00000508465 YTHDF2Q9Y5A9 579 aaKnown RBP3.2□□□□□ -1.9
NUP54-206ENST00000508465 IGHV4-4A0A075B6R2 117 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 IGKV2-40A0A087WW87 121 aaPredicted RBP3.19□□□□□ -1.9
NUP54-206ENST00000508465 SMLR1H3BR10 107 aa3.19□□□□□ -1.9
NUP54-206ENST00000508465 OR7C2O60412 319 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms