RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ZNRF2Q8NHG8 242 aa10.97□□□□□ -0.65
HDAC4-213ENST00000496347 CMTM2Q8TAZ6 248 aa10.97□□□□□ -0.65
HDAC4-213ENST00000496347 PSMG3Q9BT73 122 aaPredicted RBP10.97□□□□□ -0.65
HDAC4-213ENST00000496347 TRGV1A0A0A0MS02 117 aa10.96□□□□□ -0.65
HDAC4-213ENST00000496347 A0A1B0GVY2 172 aa10.96□□□□□ -0.65
HDAC4-213ENST00000496347 SPINK4O60575 86 aa10.96□□□□□ -0.65
HDAC4-213ENST00000496347 ZNF415Q09FC8 603 aa10.96□□□□□ -0.65
HDAC4-213ENST00000496347 HERC2O95714 4834 aa10.96□□□□□ -0.66
HDAC4-213ENST00000496347 PKD1P98161 4303 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 CDC34P49427 236 aaPredicted RBP10.95□□□□□ -0.66
HDAC4-213ENST00000496347 C1orf134Q5TEV5 83 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 Q6AWC8 147 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 HSD17B11Q8NBQ5 300 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 OR10G4Q8NGN3 311 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 OR10G9Q8NGN4 311 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 OR10G7Q8NGN6 311 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 ST6GAL2Q96JF0 529 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 LINC00588Q9Y4M8 146 aa10.95□□□□□ -0.66
HDAC4-213ENST00000496347 NBDYA0A0U1RRE5 68 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 MBP02144 154 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 ARL14EPLP0DKL9 152 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 SSX7Q7RTT5 188 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 HYLS1Q96M11 299 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 KLF12Q9Y4X4 402 aa10.94□□□□□ -0.66
HDAC4-213ENST00000496347 KIAA1109Q2LD37 5005 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 A0A0J9YY99 117 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 SERTM2A0A1B0GWG4 89 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 SERF2P84101 59 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 INO80EQ8NBZ0 244 aaPredicted RBP10.93□□□□□ -0.66
HDAC4-213ENST00000496347 UPK3BQ9BT76 320 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 TP53TG3Q9ULZ0 132 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 DNAH11Q96DT5 4516 aa10.93□□□□□ -0.66
HDAC4-213ENST00000496347 TRGV11A0A075B6L2 103 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 PGPA6NDG6 321 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 EIF3GO75821 320 aaKnown RBP eCLIP10.92□□□□□ -0.66
HDAC4-213ENST00000496347 STAG3L2P0CL84 134 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 STAG3L3P0CL85 134 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 ATP6V0CP27449 155 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 TTC32Q5I0X7 151 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 Q6ZQT7 251 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 GOLT1AQ6ZVE7 132 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 RPH3ALQ9UNE2 315 aa10.92□□□□□ -0.66
HDAC4-213ENST00000496347 RGS21Q2M5E4 152 aa10.91□□□□□ -0.66
HDAC4-213ENST00000496347 TDRG1Q3Y452 100 aa10.91□□□□□ -0.66
HDAC4-213ENST00000496347 MUC21Q5SSG8 566 aa10.91□□□□□ -0.66
HDAC4-213ENST00000496347 C5orf17Q8NAS9 161 aa10.91□□□□□ -0.66
HDAC4-213ENST00000496347 RAB24Q969Q5 203 aa10.91□□□□□ -0.66
HDAC4-213ENST00000496347 MRPL16Q9NX20 251 aaKnown RBP10.91□□□□□ -0.66
HDAC4-213ENST00000496347 MRPS16Q9Y3D3 137 aaKnown RBP10.91□□□□□ -0.66
HDAC4-213ENST00000496347 FXYD6-FXYD2A0A087WZ82 144 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 RNF222A6NCQ9 220 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 HMGB3O15347 200 aaKnown RBP10.9□□□□□ -0.66
HDAC4-213ENST00000496347 GCHFRP30047 84 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 Q5BKY6 102 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 FAM159AQ6UWV7 190 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 OR2T35Q8NGX2 323 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 SUN5Q8TC36 379 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 VSIG2Q96IQ7 327 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 SH3BGRL3Q9H299 93 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 TNFSF18Q9UNG2 199 aa10.9□□□□□ -0.66
HDAC4-213ENST00000496347 DYNC1H1Q14204 4646 aaKnown RBP10.89□□□□□ -0.67
HDAC4-213ENST00000496347 BORCS7-ASMTA0A0B4J1R7 106 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 CXorf1O96002 111 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 SLAQ13239 276 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 TMEM183BQ1AE95 376 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 TMEM183AQ8IXX5 376 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 C6orf223Q8N319 242 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 SPXQ9BT56 116 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 NDFIP1Q9BT67 221 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 TMEM167BQ9NRX6 74 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 NAGKQ9UJ70 344 aa10.89□□□□□ -0.67
HDAC4-213ENST00000496347 A0A096LPF7 62 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 TRAV8-1A0A0A6YYK1 113 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 TRAV21A0A0B4J279 112 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 A0A1W2PPQ1 181 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 K7EQM0 130 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 GNG5P63218 68 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 RASL10AQ92737 203 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 ACTR3CQ9C0K3 210 aaPredicted RBP10.88□□□□□ -0.67
HDAC4-213ENST00000496347 Q9H8V8 135 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 TREM1Q9NP99 234 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 PRO0255Q9UI72 69 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 ICOSQ9Y6W8 199 aa10.88□□□□□ -0.67
HDAC4-213ENST00000496347 F6UZH7 168 aa10.87□□□□□ -0.67
HDAC4-213ENST00000496347 PAX4O43316 350 aa10.87□□□□□ -0.67
HDAC4-213ENST00000496347 TCRAP04437 139 aa10.87□□□□□ -0.67
HDAC4-213ENST00000496347 BTF3P20290 206 aaKnown RBP10.87□□□□□ -0.67
HDAC4-213ENST00000496347 ESRGQ1W209 222 aa10.87□□□□□ -0.67
HDAC4-213ENST00000496347 MDFICQ9P1T7 246 aa10.87□□□□□ -0.67
HDAC4-213ENST00000496347 FBLL1A6NHQ2 334 aaKnown RBP10.86□□□□□ -0.67
HDAC4-213ENST00000496347 GGTLC3B5MD39 225 aa10.86□□□□□ -0.67
HDAC4-213ENST00000496347 IGHV3-53P01767 116 aa10.86□□□□□ -0.67
HDAC4-213ENST00000496347 RPL7L1Q6DKI1 246 aaKnown RBP10.86□□□□□ -0.67
HDAC4-213ENST00000496347 TVP23CQ96ET8 276 aa10.86□□□□□ -0.67
HDAC4-213ENST00000496347 SDF2L1Q9HCN8 221 aa10.86□□□□□ -0.67
HDAC4-213ENST00000496347 G3V3Q6 166 aa10.85□□□□□ -0.67
HDAC4-213ENST00000496347 MED14OSP0DP75 135 aa10.85□□□□□ -0.67
HDAC4-213ENST00000496347 CRYBA4P53673 196 aa10.85□□□□□ -0.67
HDAC4-213ENST00000496347 IQCF2Q8IXL9 164 aa10.85□□□□□ -0.67
HDAC4-213ENST00000496347 CYB561D1Q8N8Q1 229 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms