RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF138P52744 262 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 KRTAP1-1Q07627 177 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 Q6ZS46 218 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 KIR2DL5AQ8N109 375 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 OR4X2Q8NGF9 303 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 URB1-AS1Q96HZ7 61 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 LINC00477Q96M19 166 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 C20orf144Q9BQM9 153 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 SSBP4Q9BWG4 385 aaPredicted RBP8.19□□□□□ -1.1
USP4-214ENST00000491791 NPFFR1Q9GZQ6 430 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 KLK15Q9H2R5 256 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 NBEAL1Q6ZS30 2694 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 IGHV3-35A0A0C4DH35 117 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 IGHV7-4-1A0A0J9YVY3 117 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 ZNF705FA8MVS1 300 aaPredicted RBP8.18□□□□□ -1.1
USP4-214ENST00000491791 OVOL1O14753 267 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 SCGB1D1O95968 90 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 TGFAP01135 160 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 IGHV4-59P01825 116 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 PF4V1P10720 104 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 ZNF80P51504 273 aaPredicted RBP8.18□□□□□ -1.1
USP4-214ENST00000491791 UNQ9165/PRO28630Q6UXU0 137 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 REC114Q7Z4M0 266 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 APRG1Q8IVJ8 170 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 TEX29Q8N6K0 151 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 PEF1Q9UBV8 284 aaKnown RBP8.18□□□□□ -1.1
USP4-214ENST00000491791 LINC00527Q9UJ94 153 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 VPREB3Q9UKI3 123 aa8.18□□□□□ -1.1
USP4-214ENST00000491791 IGHV3OR16-8A0A075B7F1 116 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 CRXO43186 299 aaPredicted RBP8.17□□□□□ -1.1
USP4-214ENST00000491791 HSBP1O75506 76 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 TRBV12-3P01733 135 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 ELANEP08246 267 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 LBHQ53QV2 105 aaPredicted RBP8.17□□□□□ -1.1
USP4-214ENST00000491791 FAM104BQ5XKR9 115 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 LYZL1Q6UWQ5 148 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 Q8N2B8 174 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 FAM19A4Q96LR4 140 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 DAZ1Q9NQZ3 744 aaKnown RBP8.17□□□□□ -1.1
USP4-214ENST00000491791 SMPXQ9UHP9 88 aa8.17□□□□□ -1.1
USP4-214ENST00000491791 IGHV4-4A0A075B6R2 117 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 LINC00614P0C842 121 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 FAM106AQ4KMX7 169 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 TMEM78Q5T7P6 136 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 IGFL4Q6B9Z1 124 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 MRPL52Q86TS9 123 aaKnown RBP8.16□□□□□ -1.1
USP4-214ENST00000491791 TMEM86BQ8N661 226 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 FER1L6-AS1Q8NA97 138 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 Q8TAT8 98 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 NDUFAF3Q9BU61 184 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 TMEM191AQ9H0A3 160 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 RNF114Q9Y508 228 aa8.16□□□□□ -1.1
USP4-214ENST00000491791 C2orf70A6NJV1 201 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 LGALS9O00182 355 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 C3orf79P0CE67 100 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 DEFA6Q01524 100 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 DEFB125Q8N687 156 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 RNF182Q8N6D2 247 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 C14orf144Q96I85 54 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 C16orf92Q96LL3 132 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 LAMTOR2Q9Y2Q5 125 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 UFC1Q9Y3C8 167 aa8.15□□□□□ -1.1
USP4-214ENST00000491791 CR1P17927 2039 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 IGHV3-66A0A0C4DH42 116 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 FAM181BA6NEQ2 426 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 LINC01546A6NGU7 62 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 M0R2Z0 102 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 ZNF207O43670 478 aaKnown RBP8.14□□□□□ -1.11
USP4-214ENST00000491791 PPBPP02775 128 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 ERCC8Q13216 396 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 PMCHL1Q16048 86 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 IL17RELQ6ZVW7 336 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 C20orf173Q96LM9 149 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 RHPN1-AS1Q9BWJ2 59 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 PRO1933Q9H354 126 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 ZNF702PQ9H963 129 aa8.14□□□□□ -1.11
USP4-214ENST00000491791 IGKV3D-20A0A0C4DH25 116 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 C20orf202A1L168 122 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 SNAI2O43623 268 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 ORM1P02763 201 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 LGALS1P09382 135 aaKnown RBP8.13□□□□□ -1.11
USP4-214ENST00000491791 ZNF705DP0CH99 300 aaPredicted RBP8.13□□□□□ -1.11
USP4-214ENST00000491791 ZNF705BP0CI00 300 aaPredicted RBP8.13□□□□□ -1.11
USP4-214ENST00000491791 MED14OSP0DP75 135 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 BTF3P20290 206 aaKnown RBP8.13□□□□□ -1.11
USP4-214ENST00000491791 RNASEKQ6P5S7 137 aaKnown RBP8.13□□□□□ -1.11
USP4-214ENST00000491791 SPATA12Q7Z6I5 190 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 FAM19A2Q8N3H0 131 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 UBE2E2Q96LR5 201 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 TMEM160Q9NX00 188 aa8.13□□□□□ -1.11
USP4-214ENST00000491791 IGHV3OR16-13A0A075B7E8 117 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 IGHV3-49A0A0A0MS15 119 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 IGHV3-74A0A0B4J1X5 117 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 IGHV1-24A0A0C4DH33 117 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 TMEM213A2RRL7 107 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 PRSS47A8MTI9 375 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 IGHV3-11P01762 117 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 CD33P20138 364 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 KRTDAPP60985 99 aa8.12□□□□□ -1.11
USP4-214ENST00000491791 CACNG7P62955 275 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms