RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 A0A1B0GV50 99 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 A0A1B0GVG6 124 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 RGS13O14921 159 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 ZNF324O75467 553 aaPredicted RBP10.5□□□□□ -0.73
USP4-212ENST00000486549 TCRAP04437 139 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 TCTAP57738 103 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 ARL6IP6Q8N6S5 226 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 LINC00476Q8WZB0 136 aa10.5□□□□□ -0.73
USP4-212ENST00000486549 NOP10Q9NPE3 64 aaKnown RBP10.5□□□□□ -0.73
USP4-212ENST00000486549 TIMM8BQ9Y5J9 83 aaPredicted RBP10.5□□□□□ -0.73
USP4-212ENST00000486549 A0A1W2PRE2 83 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 CBY3A6NI87 242 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 SNURFLB1AK76 121 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 UMAD1C9J7I0 102 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 F6UZH7 168 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 K7EQM0 130 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 LY6G6CO95867 125 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 EIF4E3Q8N5X7 224 aaKnown RBP10.49□□□□□ -0.73
USP4-212ENST00000486549 STOML3Q8TAV4 291 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 EPDR1Q9UM22 224 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 LENEPQ9Y5L5 61 aa10.49□□□□□ -0.73
USP4-212ENST00000486549 IGHV4-4A0A075B6R2 117 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 SERTM2A0A1B0GWG4 89 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 IFNA7P01567 189 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 MUC21Q5SSG8 566 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 CYB561D1Q8N8Q1 229 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 SFT2D1Q8WV19 159 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 DNAH1Q9P2D7 4330 aa10.48□□□□□ -0.73
USP4-212ENST00000486549 IGHV1OR15-1A0A075B7D0 117 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 FAM74A7A6NL05 159 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 ZFP69Q49AA0 526 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 ZNF680Q8NEM1 530 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 TVP23CQ96ET8 276 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 ATG101Q9BSB4 218 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 NDFIP1Q9BT67 221 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 TREM1Q9NP99 234 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 NAGKQ9UJ70 344 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 TP53TG3Q9ULZ0 132 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 APLNQ9ULZ1 77 aa10.47□□□□□ -0.73
USP4-212ENST00000486549 FLI1Q01543 452 aaPredicted RBP10.46□□□□□ -0.73
USP4-212ENST00000486549 CST9LP1Q5W188 147 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 Q6AWC8 147 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 DPPA3Q6W0C5 159 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 PRNTQ86SH4 94 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 LINC00467Q9BRT7 94 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 GSN-AS1Q9NRJ2 163 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 PSG8Q9UQ74 426 aa10.46□□□□□ -0.73
USP4-212ENST00000486549 TRAV34A0A0B4J273 112 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 GAGE12BA1L429 117 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 PEX7O00628 323 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 GAGE7O76087 117 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 H2AFB1P0C5Y9 115 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 GAGE12FP0CL80 117 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 GAGE12GP0CL81 117 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 GAGE12IP0CL82 117 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 ANXA2RQ3ZCQ2 193 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 LGALS9CQ6DKI2 356 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 EIF5AL1Q6IS14 154 aaKnown RBP10.45□□□□□ -0.74
USP4-212ENST00000486549 C9orf62Q8N4C0 152 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 TMEM75Q8N9X5 138 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 C11orf72Q8NBR9 251 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 MBD3L1Q8WWY6 194 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 LINC00479Q96M42 142 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 C8orf49Q96NF6 230 aa10.45□□□□□ -0.74
USP4-212ENST00000486549 IGLV2-11P01706 119 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 ATP5G3P48201 142 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 FAM159AQ6UWV7 190 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 SLC51BQ86UW2 128 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 NDUFAF3Q9BU61 184 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 NKX6-2Q9C056 277 aaPredicted RBP10.44□□□□□ -0.74
USP4-212ENST00000486549 KLF12Q9Y4X4 402 aa10.44□□□□□ -0.74
USP4-212ENST00000486549 TRAV21A0A0B4J279 112 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 F5H768 121 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 PAGE4O60829 102 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 ATP5G1P05496 136 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 PPT1P50897 306 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 TCL1AP56279 114 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 TMEM183BQ1AE95 376 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 Q6ZTI0 123 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 TMEM183AQ8IXX5 376 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 HYDINQ4G0P3 5121 aa10.43□□□□□ -0.74
USP4-212ENST00000486549 TRGV1A0A0A0MS02 117 aa10.42□□□□□ -0.74
USP4-212ENST00000486549 FBLL1A6NHQ2 334 aaKnown RBP10.42□□□□□ -0.74
USP4-212ENST00000486549 GCGP01275 180 aa10.42□□□□□ -0.74
USP4-212ENST00000486549 ZNF415Q09FC8 603 aa10.42□□□□□ -0.74
USP4-212ENST00000486549 DAZ2Q13117 558 aaKnown RBP10.42□□□□□ -0.74
USP4-212ENST00000486549 IBA57Q5T440 356 aaKnown RBP10.42□□□□□ -0.74
USP4-212ENST00000486549 TMEM88Q6PEY1 159 aa10.42□□□□□ -0.74
USP4-212ENST00000486549 HIST1H2BAQ96A08 127 aa10.42□□□□□ -0.74
USP4-212ENST00000486549 TRGV11A0A075B6L2 103 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 SULT1A2P50226 295 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 RAB5CP51148 216 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 ZNF80P51504 273 aaPredicted RBP10.41□□□□□ -0.74
USP4-212ENST00000486549 NKX2-5P52952 324 aaPredicted RBP10.41□□□□□ -0.74
USP4-212ENST00000486549 UBE2G1P62253 170 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 SMUG1Q53HV7 270 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 Q86TA4 180 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 LINC00612Q8N6U2 182 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 MRPL16Q9NX20 251 aaKnown RBP10.41□□□□□ -0.74
USP4-212ENST00000486549 MDFICQ9P1T7 246 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms