RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CLRN3Q8NCR9 226 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 LINC00477Q96M19 166 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 NDFIP1Q9BT67 221 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 BIN3Q9NQY0 253 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 LENEPQ9Y5L5 61 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 SPRY2O43597 315 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 ADIRFQ15847 76 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 SAPCD1Q5SSQ6 148 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 FOXI2Q6ZQN5 318 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 PRNTQ86SH4 94 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 TMEM183AQ8IXX5 376 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 OCC1Q8TAD7 63 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 VGLL1Q99990 258 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 MAP6D1Q9H9H5 199 aa12.5□□□□□ -0.41
VIM-205ENST00000485947 TRBV7-9A0A0J9YWB2 115 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 M0R036 132 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 IGLV2-8P01709 118 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 ZNF138P52744 262 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 DEFB131AP59861 70 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 RHEBQ15382 184 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 EBLN2Q6P2I7 272 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 SGK494Q96LW2 274 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 MLST8Q9BVC4 326 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 SAV1Q9H4B6 383 aaPredicted RBP12.49□□□□□ -0.41
VIM-205ENST00000485947 ZNF492Q9P255 531 aa12.49□□□□□ -0.41
VIM-205ENST00000485947 A0A0J9YX75 114 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 PGPEP1LA6NFU8 196 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 DUSP14O95147 198 aaKnown RBP12.48□□□□□ -0.41
VIM-205ENST00000485947 GCGP01275 180 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 HIST1H1AQ02539 215 aaPredicted RBP12.48□□□□□ -0.41
VIM-205ENST00000485947 ERCC8Q13216 396 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 ZFAND6Q6FIF0 208 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 COX8CQ7Z4L0 72 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 ISOC2Q96AB3 205 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 RNF183Q96D59 192 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 AGPAT4-IT1Q9H0P7 198 aa12.48□□□□□ -0.41
VIM-205ENST00000485947 LCE6AA0A183 80 aa12.47□□□□□ -0.41
VIM-205ENST00000485947 ODF3Q96PU9 254 aa12.47□□□□□ -0.41
VIM-205ENST00000485947 CSTL1Q9H114 145 aa12.47□□□□□ -0.41
VIM-205ENST00000485947 F6UB75 175 aa12.46□□□□□ -0.41
VIM-205ENST00000485947 K7EN84 100 aa12.46□□□□□ -0.41
VIM-205ENST00000485947 MGST1P10620 155 aaKnown RBP12.46□□□□□ -0.41
VIM-205ENST00000485947 A0A087WWC5 75 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 A8MTW9 85 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 CT45A10P0DMU9 189 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 PRB4P10163 310 aaPredicted RBP12.45□□□□□ -0.42
VIM-205ENST00000485947 HLA-DRB4P13762 266 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 APRG1Q8IVJ8 170 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 NHLRC2Q8NBF2 726 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 Q8TAT8 98 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 HLA-DRB4X5D2U9 266 aa12.45□□□□□ -0.42
VIM-205ENST00000485947 C7orf77A4D0Y5 90 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 PPP1R2P9O14990 202 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 MT-ND4LP03901 98 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 ZNF705DP0CH99 300 aaPredicted RBP12.44□□□□□ -0.42
VIM-205ENST00000485947 ZNF705BP0CI00 300 aaPredicted RBP12.44□□□□□ -0.42
VIM-205ENST00000485947 DEFB1P60022 68 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 DEFB135Q30KP9 77 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 SMUG1Q53HV7 270 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 FAM231DQ6ZW35 169 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 ANAPC16Q96DE5 110 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 FAM19A4Q96LR4 140 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 CLUHP3Q96NS8 147 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 CTDSP1Q9GZU7 261 aa12.44□□□□□ -0.42
VIM-205ENST00000485947 CRISP2P16562 243 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 RPL35AP18077 110 aaKnown RBP12.43□□□□□ -0.42
VIM-205ENST00000485947 OR5I1Q13606 314 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 GDF5OSQ5U4N7 250 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 C15orf54Q8N8G6 183 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 ZC2HC1AQ96GY0 325 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 SFRP2Q96HF1 295 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 C8orf49Q96NF6 230 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 RPS10P5Q9NQ39 176 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 OSTCQ9NRP0 149 aa12.43□□□□□ -0.42
VIM-205ENST00000485947 H3BMM0 161 aa12.42□□□□□ -0.42
VIM-205ENST00000485947 LEPP41159 167 aa12.42□□□□□ -0.42
VIM-205ENST00000485947 RNF212Q495C1 297 aa12.42□□□□□ -0.42
VIM-205ENST00000485947 IBA57Q5T440 356 aaKnown RBP12.42□□□□□ -0.42
VIM-205ENST00000485947 ATRAIDQ6UW56 229 aa12.42□□□□□ -0.42
VIM-205ENST00000485947 TMEM242Q9NWH2 141 aa12.42□□□□□ -0.42
VIM-205ENST00000485947 C19orf71A6NCJ1 209 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 KNCNA6PVL3 124 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 TSPOP30536 169 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 ERVFC1-1P60608 527 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 ACTL10Q5JWF8 245 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 PRR27Q6MZM9 219 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 MORN3Q6PF18 240 aaPredicted RBP12.41□□□□□ -0.42
VIM-205ENST00000485947 OR4B1Q8NGF8 309 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 OR10G8Q8NGN5 311 aa12.41□□□□□ -0.42
VIM-205ENST00000485947 DAZAP1Q96EP5 407 aaKnown RBP12.41□□□□□ -0.42
VIM-205ENST00000485947 A0A0J9YWU9 116 aa12.4□□□□□ -0.42
VIM-205ENST00000485947 FAM162BQ5T6X4 162 aa12.4□□□□□ -0.42
VIM-205ENST00000485947 STHQ8IWL8 128 aa12.4□□□□□ -0.42
VIM-205ENST00000485947 ZFAND2AQ8N6M9 145 aa12.4□□□□□ -0.42
VIM-205ENST00000485947 CSMD3Q7Z407 3707 aa12.39□□□□□ -0.43
VIM-205ENST00000485947 NUPR2A6NF83 97 aa12.39□□□□□ -0.43
VIM-205ENST00000485947 FABP5P3A8MUU1 101 aa12.39□□□□□ -0.43
VIM-205ENST00000485947 H7BYZ3 331 aa12.39□□□□□ -0.43
VIM-205ENST00000485947 AMTNQ6UX39 209 aa12.39□□□□□ -0.43
VIM-205ENST00000485947 RNASE7Q9H1E1 156 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms