RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MRPL55Q7Z7F7 128 aaKnown RBP10.76□□□□□ -0.69
COL6A3-209ENST00000472056 GGNQ86UU5 652 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 S4R3C0 116 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 C12orf74Q32Q52 190 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 C15orf53Q8NAA6 179 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 SPAARA0A1B0GVQ0 90 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 CLPSL1A2RUU4 121 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 BAALCQ8WXS3 180 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 ZFP36L1Q07352 338 aaKnown RBP10.75□□□□□ -0.69
COL6A3-209ENST00000472056 TMEM243Q9BU79 118 aa10.75□□□□□ -0.69
COL6A3-209ENST00000472056 TRAV25A0A0B4J276 109 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 CFHR2P36980 270 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 Q71RC1 249 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-209ENST00000472056 ZNF837Q96EG3 531 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-209ENST00000472056 SDHAF1A6NFY7 115 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 ATP5EP56381 51 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-209ENST00000472056 CRLF1O75462 422 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 TGFBR3LH3BV60 316 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 IGLC7A0M8Q6 106 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 LINC00473A8K010 186 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 JMJD7-PLA2G4BH0Y9G9 81 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 RNF114Q9Y508 228 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-209ENST00000472056 K7EM74 188 aa10.74□□□□□ -0.69
COL6A3-209ENST00000472056 A0A0B4J2C4 111 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 FAM27E3Q08E93 113 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 CRYBA4P53673 196 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 C8orf31Q8N9H6 132 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 B5MCH6 92 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 IGHV3-11P01762 117 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 PRR25Q96S07 402 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 LINC00311Q8N616 119 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 C9orf106Q8NAJ2 232 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 TRAV12-1A0A0B4J245 112 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 ZNF134P52741 427 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 CCDC168Q8NDH2 2452 aa10.73□□□□□ -0.69
COL6A3-209ENST00000472056 PATE3B3GLJ2 98 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 CFC1BP0CG36 223 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 CFC1P0CG37 223 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 CTSBP07858 339 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 EFNA4P52798 201 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 MORN5Q5VZ52 161 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 PSPNO60542 156 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 FLVCR1-AS1Q8TAF5 88 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 CFHR4Q92496 578 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 ZNF833PQ6ZTB9 187 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 H3BT86 120 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 LTAP01374 205 aa10.72□□□□□ -0.69
COL6A3-209ENST00000472056 MRPL35Q9NZE8 188 aaKnown RBP10.72□□□□□ -0.69
COL6A3-209ENST00000472056 B4DSR2 109 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 WFDC9Q8NEX5 89 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 CSRP2Q16527 193 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 SH2D6Q7Z4S9 175 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 ABCA2Q9BZC7 2435 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 WDR87Q6ZQQ6 2873 aa10.71□□□□□ -0.69
COL6A3-209ENST00000472056 SS18L2Q9UHA2 77 aa10.71□□□□□ -0.7
COL6A3-209ENST00000472056 METRNQ9UJH8 293 aa10.71□□□□□ -0.7
COL6A3-209ENST00000472056 H3BUA1 57 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 SPACA3Q8IXA5 215 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 Q8TAT8 98 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 NDUFA4O00483 81 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 Q8TCH9 128 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 SCRT2Q9NQ03 307 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 LINC01560Q8TB33 94 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 IGHV3OR16-8A0A075B7F1 116 aa10.7□□□□□ -0.7
COL6A3-209ENST00000472056 FAM110DQ8TAY7 271 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-209ENST00000472056 VWC2Q2TAL6 325 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 NDUFS7O75251 213 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 CELA3AP09093 270 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 C11orf44Q8N8P7 122 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 SLC25A29Q8N8R3 303 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 RHPN1-AS1Q9BWJ2 59 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 GPR179Q6PRD1 2367 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 C9JQL5 133 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 CD177Q8N6Q3 437 aa10.69□□□□□ -0.7
COL6A3-209ENST00000472056 K7ERS5 55 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 BRK1Q8WUW1 75 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 H3BRN7 92 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 ZNF747Q9BV97 191 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 IGHV1OR15-1A0A075B7D0 117 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 SMKR1H3BMG3 65 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 TAX1BP3O14907 124 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 BAALC-AS2P0C853 105 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-209ENST00000472056 BDP1A6H8Y1 2624 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 PRSS57Q6UWY2 283 aa10.68□□□□□ -0.7
COL6A3-209ENST00000472056 ATP5EP2Q5VTU8 51 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 PAX9P55771 341 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 GAFA1Q96PS6 74 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 ZNF672Q499Z4 452 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-209ENST00000472056 FAM201AQ5SY85 155 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 LRP4O75096 1905 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 APOC4P55056 127 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 SELENOKQ9Y6D0 94 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 IGHV3-73A0A0B4J1V6 119 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 G3V4G9 280 aa10.67□□□□□ -0.7
COL6A3-209ENST00000472056 ETV2O00321 342 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 PIP4P2Q8N4L2 257 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 SPRR3Q9UBC9 169 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 LCNL1Q6ZST4 164 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms