RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 TMEM263Q8WUH6 116 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-203ENST00000461819 ZNF324O75467 553 aaPredicted RBP16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 CEMP1Q6PRD7 247 aaPredicted RBP16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 ZNF493Q6ZR52 646 aa16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 Q6ZTC4 211 aa16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 TREM1Q9NP99 234 aa16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 ARL2-SNX15V9GYD0 113 aa16.35■□□□□ 0.21
CCDC28B-203ENST00000461819 TEX46H3BTG2 121 aa16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 PEX7O00628 323 aa16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 PAGE4O60829 102 aa16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 C12orf74Q32Q52 190 aa16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 TMEM75Q8N9X5 138 aa16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 RNASE8Q8TDE3 154 aaKnown RBP16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 KLK5Q9Y337 293 aaPredicted RBP16.34■□□□□ 0.21
CCDC28B-203ENST00000461819 FBLL1A6NHQ2 334 aaKnown RBP16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 C11orf94C9JXX5 98 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 RGS13O14921 159 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 PPT1P50897 306 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 FLI1Q01543 452 aaPredicted RBP16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 PRNTQ86SH4 94 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 HIST1H2BAQ96A08 127 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 PSG8Q9UQ74 426 aa16.33■□□□□ 0.2
CCDC28B-203ENST00000461819 PLAC8L1A1L4L8 177 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 CBY3A6NI87 242 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 F6UZH7 168 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 ATP5G3P48201 142 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 EIF4E3Q8N5X7 224 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 TCEAL7Q9BRU2 100 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 TENM2Q9NT68 2774 aa16.32■□□□□ 0.2
CCDC28B-203ENST00000461819 TRAV10A0A0B4J240 114 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 LYRM9A8MSI8 78 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 SNURFLB1AK76 121 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 DAD1P61803 113 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 Q6ZQT7 251 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 TVP23CQ96ET8 276 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 LINC00467Q9BRT7 94 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 BOLA1Q9Y3E2 137 aa16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 TIMM8BQ9Y5J9 83 aaPredicted RBP16.31■□□□□ 0.2
CCDC28B-203ENST00000461819 DYNC2H1Q8NCM8 4307 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 IGHV1OR15-1A0A075B7D0 117 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 TRAV1-1A0A0B4J248 108 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 TRAV34A0A0B4J273 112 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 IGLV2-11P01706 119 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 Q6AWC8 147 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 ALKAL2Q6UX46 152 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 ZNF680Q8NEM1 530 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 LINC00479Q96M42 142 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 GNG13Q9P2W3 67 aa16.3■□□□□ 0.2
CCDC28B-203ENST00000461819 MUC21Q5SSG8 566 aa16.29■□□□□ 0.2
CCDC28B-203ENST00000461819 NOP10Q9NPE3 64 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-203ENST00000461819 MANBALQ9NQG1 85 aa16.29■□□□□ 0.2
CCDC28B-203ENST00000461819 CCL20P78556 96 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 ANXA2RQ3ZCQ2 193 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 SAPCD1Q5SSQ6 148 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 C2CD4CQ8TF44 421 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 C8orf49Q96NF6 230 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 NAGKQ9UJ70 344 aa16.28■□□□□ 0.2
CCDC28B-203ENST00000461819 DEFB131BA0A096LNP1 70 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 TRAV21A0A0B4J279 112 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 DEFB130BP0DP73 79 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 DEFB130AP0DP74 79 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 UBE2G1P62253 170 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 FAM159AQ6UWV7 190 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 Q86TA4 180 aa16.27■□□□□ 0.2
CCDC28B-203ENST00000461819 HTN3P15516 51 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 AKR1C3P42330 323 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 SMUG1Q53HV7 270 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 FMC1Q96HJ9 113 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 GSN-AS1Q9NRJ2 163 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 TP53TG3Q9ULZ0 132 aa16.26■□□□□ 0.19
CCDC28B-203ENST00000461819 GCGP01275 180 aa16.25■□□□□ 0.19
CCDC28B-203ENST00000461819 IFNA1P01562 189 aa16.25■□□□□ 0.19
CCDC28B-203ENST00000461819 IGLL5B9A064 214 aa16.24■□□□□ 0.19
CCDC28B-203ENST00000461819 C11orf72Q8NBR9 251 aa16.24■□□□□ 0.19
CCDC28B-203ENST00000461819 PLECQ15149 4684 aaKnown RBP16.24■□□□□ 0.19
CCDC28B-203ENST00000461819 KMT2CQ8NEZ4 4911 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 SCO2A0A1W2PP80 73 aa16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 ZNF415Q09FC8 603 aa16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 TMEM183BQ1AE95 376 aa16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 IBA57Q5T440 356 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 TMEM183AQ8IXX5 376 aa16.23■□□□□ 0.19
CCDC28B-203ENST00000461819 TRGV11A0A075B6L2 103 aa16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 ZNF80P51504 273 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 BLOC1S1P78537 153 aa16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 DAZ2Q13117 558 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 KLF12Q9Y4X4 402 aa16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 LYSTQ99698 3801 aa16.22■□□□□ 0.19
CCDC28B-203ENST00000461819 PFN1P07737 140 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-203ENST00000461819 TCL1AP56279 114 aa16.21■□□□□ 0.19
CCDC28B-203ENST00000461819 ZFP30Q9Y2G7 519 aa16.21■□□□□ 0.19
CCDC28B-203ENST00000461819 GAGE12BA1L429 117 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 GAGE7O76087 117 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 S100A9P06702 114 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 GAGE12FP0CL80 117 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 GAGE12GP0CL81 117 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 GAGE12IP0CL82 117 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 TDRG1Q3Y452 100 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 KCNS1Q96KK3 526 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 TXNDC17Q9BRA2 123 aa16.2■□□□□ 0.18
CCDC28B-203ENST00000461819 SDF2L1Q9HCN8 221 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms