RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 IMMP2LQ96T52 175 aa12.49□□□□□ -0.41
PRPF40A-204ENST00000450303 CSTL1Q9H114 145 aa12.49□□□□□ -0.41
PRPF40A-204ENST00000450303 TGIF2-C20orf24A0A0A6YYL0 155 aa12.48□□□□□ -0.41
PRPF40A-204ENST00000450303 EBLN2Q6P2I7 272 aa12.48□□□□□ -0.41
PRPF40A-204ENST00000450303 AGRNO00468 2067 aa12.48□□□□□ -0.41
PRPF40A-204ENST00000450303 LYSTQ99698 3801 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 SERTM2A0A1B0GWG4 89 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 K7EQM0 130 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 CXCL1P09341 107 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 HLA-DMBP28068 263 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 AKR1D1P51857 326 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 C20orf173Q96LM9 149 aa12.47□□□□□ -0.41
PRPF40A-204ENST00000450303 GGTLC3B5MD39 225 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 GNG4P50150 75 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 RPL19P84098 196 aaKnown RBP12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 SMUG1Q53HV7 270 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 FOXI2Q6ZQN5 318 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 OR10G8Q8NGN5 311 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 OR10J6PQ8NGY7 276 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 SFRP2Q96HF1 295 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 EPDR1Q9UM22 224 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 RPH3ALQ9UNE2 315 aa12.46□□□□□ -0.41
PRPF40A-204ENST00000450303 ZNF705FA8MVS1 300 aaPredicted RBP12.45□□□□□ -0.42
PRPF40A-204ENST00000450303 M0R3E3 92 aa12.45□□□□□ -0.42
PRPF40A-204ENST00000450303 DUSP14O95147 198 aaKnown RBP12.45□□□□□ -0.42
PRPF40A-204ENST00000450303 PFN1P07737 140 aaKnown RBP12.45□□□□□ -0.42
PRPF40A-204ENST00000450303 CNN1P51911 297 aaKnown RBP12.45□□□□□ -0.42
PRPF40A-204ENST00000450303 TRAV9-1A0A075B6T8 112 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 RBAKDNA6NC62 111 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 KNCNA6PVL3 124 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 DIRC3C9JPN6 131 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 CA1P00915 261 aaPredicted RBP12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 RPL35P42766 123 aaKnown RBP12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 TAS2R60P59551 318 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 SNRPEP62304 92 aaKnown RBP12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 STHQ8IWL8 128 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 OR8A1Q8NGG7 326 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 PYGO2Q9BRQ0 406 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 ATG101Q9BSB4 218 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 DERL1Q9BUN8 251 aa12.44□□□□□ -0.42
PRPF40A-204ENST00000450303 C5orf52A6NGY3 159 aa12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 FBLL1A6NHQ2 334 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 TCRAP04437 139 aa12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 S100A8P05109 93 aa12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 S100A9P06702 114 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 FAM3BP58499 235 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 OCC1Q8TAD7 63 aa12.43□□□□□ -0.42
PRPF40A-204ENST00000450303 A0A0J9YX75 114 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 A0A1W2PPQ1 181 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 PEX7O00628 323 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 GNG5P63218 68 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 HIST1H1AQ02539 215 aaPredicted RBP12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 ACTL10Q5JWF8 245 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 GOLT1AQ6ZVE7 132 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 OR11H2Q8NH07 326 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 LINC00477Q96M19 166 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 PPP1R14DQ9NXH3 145 aa12.42□□□□□ -0.42
PRPF40A-204ENST00000450303 TRGC2P03986 189 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 HLA-DRB4P13762 266 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 CENPWQ5EE01 88 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 TMEM78Q5T7P6 136 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 OR4B1Q8NGF8 309 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 HLA-DRB4X5D2U9 266 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 PLECQ15149 4684 aaKnown RBP12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 DNAH1Q9P2D7 4330 aa12.41□□□□□ -0.42
PRPF40A-204ENST00000450303 IGKV2-40A0A087WW87 121 aaPredicted RBP12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 PRAC2D3DTV9 90 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 F6UB75 175 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 DEFB4AO15263 64 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 IGKV2D-40P01614 121 aaPredicted RBP12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 TYMSP04818 313 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 NDUFA6P56556 154 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 UBE2G1P62253 170 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 FABP9Q0Z7S8 132 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 C9orf47Q6ZRZ4 202 aa12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 TRPT1Q86TN4 253 aaKnown RBP12.4□□□□□ -0.42
PRPF40A-204ENST00000450303 HYDINQ4G0P3 5121 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 NPIPB6E9PJ23 425 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 H3BMM0 161 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 ERVFC1-1P60608 527 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 CEMP1Q6PRD7 247 aaPredicted RBP12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 TMEM75Q8N9X5 138 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 FMC1Q96HJ9 113 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 CLUHP3Q96NS8 147 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 OSTCQ9NRP0 149 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 IL36BQ9NZH7 164 aa12.39□□□□□ -0.43
PRPF40A-204ENST00000450303 TRBV20OR9-2A0A075B6H5 130 aa12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 GIG44P09565 113 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 ZNF705DP0CH99 300 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 ZNF705BP0CI00 300 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 DEFB1P60022 68 aa12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 NUTF2P61970 127 aaKnown RBP12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 GDF5OSQ5U4N7 250 aa12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 SMIM12Q96EX1 92 aa12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 NDFIP1Q9BT67 221 aa12.38□□□□□ -0.43
PRPF40A-204ENST00000450303 NUPR2A6NF83 97 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 PGPEP1LA6NFU8 196 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 MGST1P10620 155 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 HOXA5P20719 270 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 TSPOP30536 169 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms