RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ADAMTSL5Q6ZMM2 481 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 TMEM61Q8N0U2 210 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 LINC00518Q8N0U6 118 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 FAM213BQ8TBF2 198 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 SCGB1C1Q8TD33 95 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 MLXQ9UH92 298 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 IZUMO1RA6ND01 250 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 SNAI2O43623 268 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 IGHV3-48P01763 117 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 SFTA3P0C7M3 94 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 OR10J1P30954 320 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 GPX4P36969 197 aaPredicted RBP4.63□□□□□ -1.67
USP40-202ENST00000409945 RND2P52198 227 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 CEBPGP53567 150 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 APOC4P55056 127 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 SERF2P84101 59 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 PSG3Q16557 428 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 GUK1Q16774 197 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 ATRAIDQ6UW56 229 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 S100A7AQ86SG5 101 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 OR4C5Q8NGB2 326 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 ACY3Q96HD9 319 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 PSMG3Q9BT73 122 aaPredicted RBP4.63□□□□□ -1.67
USP40-202ENST00000409945 RHPN1-AS1Q9BWJ2 59 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 RBKSQ9H477 322 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 SMPXQ9UHP9 88 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 URGCP-MRPS24S4R325 110 aa4.63□□□□□ -1.67
USP40-202ENST00000409945 LOC102724200A0A096LPH7 203 aaPredicted RBP4.62□□□□□ -1.67
USP40-202ENST00000409945 ZFP92A6NM28 416 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 H3BP45 60 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 H7C423 109 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 AGPAT2O15120 278 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 RS1O15537 224 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 ZNF207O43670 478 aaKnown RBP4.62□□□□□ -1.67
USP40-202ENST00000409945 GAS8-AS1O95177 125 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 IAPPP10997 89 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 RAB4AP20338 218 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 YPEL3P61236 119 aaPredicted RBP4.62□□□□□ -1.67
USP40-202ENST00000409945 ATP6V1FQ16864 119 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 BSXQ3C1V8 233 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 SPANXN5Q5MJ07 72 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 PVRIGQ6DKI7 326 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TOMM20LQ6UXN7 152 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 SBSPONQ8IVN8 264 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 Q8N377 158 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 PACRGQ96M98 296 aaPredicted RBP4.62□□□□□ -1.67
USP40-202ENST00000409945 EIF5A2Q9GZV4 153 aaKnown RBP4.62□□□□□ -1.67
USP40-202ENST00000409945 IGLV4-3A0A075B6K6 122 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 IGHV3OR16-8A0A075B7F1 116 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TRAV1-1A0A0B4J248 108 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 NDUFAF8A1L188 74 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 CHEK1O14757 476 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 CD7P09564 240 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 METTL15P1P0C7V9 234 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 C5orf47Q569G3 176 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TMEM14EPQ6UXP3 125 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TCF24Q7RTU0 167 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 DEFB125Q8N687 156 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 GGTLC1Q9BX51 225 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 SLC35B3Q9H1N7 401 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 RABAC1Q9UI14 185 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TIMM9Q9Y5J7 89 aa4.62□□□□□ -1.67
USP40-202ENST00000409945 TRAV2A0A0B4J234 112 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 TEX48A0A1B0GUV7 120 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 SMCO3A2RU48 225 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 FAM74A7A6NL05 159 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 SLC38A11Q08AI6 406 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 HAGHQ16775 308 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 TIGITQ495A1 244 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 FAM74A3Q4VXF1 159 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 OR10P1Q8NGE3 313 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 OR51G1Q8NGK1 321 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 LINC00479Q96M42 142 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 TM2D3Q9BRN9 247 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 SCRT1Q9BWW7 348 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 NRN1Q9NPD7 142 aa4.61□□□□□ -1.67
USP40-202ENST00000409945 IGKV3-7A0A075B6H7 116 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 IGHV3-49A0A0A0MS15 119 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 RBFOX3A6NFN3 312 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 TMEM238C9JI98 176 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 C3orf84H3BNL1 204 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 IL4P05112 153 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 MT3P25713 68 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 TFPI2P48307 235 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 C6orf226Q5I0X4 101 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 SAMD13Q5VXD3 122 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 STXBP6Q8NFX7 210 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 RNF2Q99496 336 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 TMEM147Q9BVK8 224 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 WDR61Q9GZS3 305 aaKnown RBP4.6□□□□□ -1.67
USP40-202ENST00000409945 IGHV3OR16-13A0A075B7E8 117 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 IGHV3-74A0A0B4J1X5 117 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 KIR2DL5BA0A0G2JN68 375 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 KIR2DL5BA0A0G2JPC4 375 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 C9JQL5 133 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 IGLC1P0CG04 106 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 CRYBB3P26998 211 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 SNRPD3P62318 126 aaKnown RBP4.6□□□□□ -1.67
USP40-202ENST00000409945 RHEBQ15382 184 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 KHDC3LQ587J8 217 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms