RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 NACAE9PAV3 2078 aa20.08■□□□□ 0.81
HMGB1-205ENST00000399494 ZNF138P52744 262 aa20.08■□□□□ 0.81
HMGB1-205ENST00000399494 EIF5AP63241 154 aaKnown RBP20.08■□□□□ 0.81
HMGB1-205ENST00000399494 AKAP14Q86UN6 197 aa20.08■□□□□ 0.81
HMGB1-205ENST00000399494 KRTAP4-5Q9BYR2 181 aa20.08■□□□□ 0.81
HMGB1-205ENST00000399494 ZNF492Q9P255 531 aa20.08■□□□□ 0.81
HMGB1-205ENST00000399494 C7orf71A4D174 169 aa20.07■□□□□ 0.8
HMGB1-205ENST00000399494 GPX1P07203 203 aa20.07■□□□□ 0.8
HMGB1-205ENST00000399494 ZNF726P1Q15940 193 aa20.07■□□□□ 0.8
HMGB1-205ENST00000399494 FAM19A4Q96LR4 140 aa20.07■□□□□ 0.8
HMGB1-205ENST00000399494 Q8TAT8 98 aa20.06■□□□□ 0.8
HMGB1-205ENST00000399494 KLLNB2CW77 178 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 SEC11BP0C7V7 166 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 CRISP2P16562 243 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 AZU1P20160 251 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 RNASE4P34096 147 aaKnown RBP20.05■□□□□ 0.8
HMGB1-205ENST00000399494 SUN5Q8TC36 379 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 C16orf74Q96GX8 76 aa20.05■□□□□ 0.8
HMGB1-205ENST00000399494 C1QBP02746 253 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 NMBP08949 121 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 BTN1A1Q13410 526 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 GOLT1AQ6ZVE7 132 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 CCDC28AQ8IWP9 274 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 ARL6IP6Q8N6S5 226 aa20.04■□□□□ 0.8
HMGB1-205ENST00000399494 MAP1LC3B2A6NCE7 125 aa20.03■□□□□ 0.8
HMGB1-205ENST00000399494 TPT1P13693 172 aaKnown RBP20.03■□□□□ 0.8
HMGB1-205ENST00000399494 FGF8P55075 233 aaPredicted RBP20.03■□□□□ 0.8
HMGB1-205ENST00000399494 FAM3BP58499 235 aaPredicted RBP20.03■□□□□ 0.8
HMGB1-205ENST00000399494 CD300CQ08708 224 aa20.03■□□□□ 0.8
HMGB1-205ENST00000399494 C15orf53Q8NAA6 179 aa20.03■□□□□ 0.8
HMGB1-205ENST00000399494 MAP1LC3BQ9GZQ8 125 aa20.03■□□□□ 0.8
HMGB1-205ENST00000399494 TRBV7-9A0A0J9YWB2 115 aa20.02■□□□□ 0.8
HMGB1-205ENST00000399494 GNG5P63218 68 aa20.02■□□□□ 0.8
HMGB1-205ENST00000399494 ZNF493Q6ZR52 646 aa20.02■□□□□ 0.8
HMGB1-205ENST00000399494 C5orf17Q8NAS9 161 aa20.02■□□□□ 0.8
HMGB1-205ENST00000399494 TMEM263Q8WUH6 116 aaKnown RBP20.02■□□□□ 0.8
HMGB1-205ENST00000399494 PYGO2Q9BRQ0 406 aa20.02■□□□□ 0.8
HMGB1-205ENST00000399494 UMAD1C9J7I0 102 aa20.01■□□□□ 0.79
HMGB1-205ENST00000399494 ZFAND2AQ8N6M9 145 aa20.01■□□□□ 0.79
HMGB1-205ENST00000399494 TMPRSS5Q9H3S3 457 aa20.01■□□□□ 0.79
HMGB1-205ENST00000399494 SUMO1P63165 101 aaKnown RBP20■□□□□ 0.79
HMGB1-205ENST00000399494 LGALSLQ3ZCW2 172 aaPredicted RBP20■□□□□ 0.79
HMGB1-205ENST00000399494 STOML3Q8TAV4 291 aa20■□□□□ 0.79
HMGB1-205ENST00000399494 LYRM9A8MSI8 78 aa19.99■□□□□ 0.79
HMGB1-205ENST00000399494 K7EQM0 130 aa19.99■□□□□ 0.79
HMGB1-205ENST00000399494 FAM213BQ8TBF2 198 aa19.99■□□□□ 0.79
HMGB1-205ENST00000399494 TMED6Q8WW62 240 aa19.99■□□□□ 0.79
HMGB1-205ENST00000399494 LENEPQ9Y5L5 61 aa19.99■□□□□ 0.79
HMGB1-205ENST00000399494 SERTM2A0A1B0GWG4 89 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 A0A1W2PRE2 83 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 GGTLC3B5MD39 225 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 FHITP49789 147 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 UBE2G2P60604 165 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 PRR9Q5T870 116 aa19.98■□□□□ 0.79
HMGB1-205ENST00000399494 RNASE8Q8TDE3 154 aaKnown RBP19.98■□□□□ 0.79
HMGB1-205ENST00000399494 TIMM8BQ9Y5J9 83 aaPredicted RBP19.98■□□□□ 0.79
HMGB1-205ENST00000399494 PLAC8L1A1L4L8 177 aa19.97■□□□□ 0.79
HMGB1-205ENST00000399494 ZNF324O75467 553 aaPredicted RBP19.97■□□□□ 0.79
HMGB1-205ENST00000399494 ATG101Q9BSB4 218 aa19.97■□□□□ 0.79
HMGB1-205ENST00000399494 TRAV8-1A0A0A6YYK1 113 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 RGS13O14921 159 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 TCRAP04437 139 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 DEFB130BP0DP73 79 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 DEFB130AP0DP74 79 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 TNP2Q05952 138 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 HSPG2P98160 4391 aa19.96■□□□□ 0.79
HMGB1-205ENST00000399494 CBY3A6NI87 242 aa19.95■□□□□ 0.78
HMGB1-205ENST00000399494 SNURFLB1AK76 121 aa19.95■□□□□ 0.78
HMGB1-205ENST00000399494 DPPA3Q6W0C5 159 aa19.95■□□□□ 0.78
HMGB1-205ENST00000399494 ZNRF2Q8NHG8 242 aa19.95■□□□□ 0.78
HMGB1-205ENST00000399494 EPDR1Q9UM22 224 aa19.95■□□□□ 0.78
HMGB1-205ENST00000399494 IFNA7P01567 189 aa19.94■□□□□ 0.78
HMGB1-205ENST00000399494 EIF5AL1Q6IS14 154 aaKnown RBP19.94■□□□□ 0.78
HMGB1-205ENST00000399494 EIF4E3Q8N5X7 224 aaKnown RBP19.94■□□□□ 0.78
HMGB1-205ENST00000399494 SFT2D1Q8WV19 159 aa19.94■□□□□ 0.78
HMGB1-205ENST00000399494 SGK494Q96LW2 274 aa19.94■□□□□ 0.78
HMGB1-205ENST00000399494 NDFIP1Q9BT67 221 aa19.94■□□□□ 0.78
HMGB1-205ENST00000399494 NKX6-2Q9C056 277 aaPredicted RBP19.94■□□□□ 0.78
HMGB1-205ENST00000399494 NOP10Q9NPE3 64 aaKnown RBP19.94■□□□□ 0.78
HMGB1-205ENST00000399494 NBDYA0A0U1RRE5 68 aa19.93■□□□□ 0.78
HMGB1-205ENST00000399494 CYB561D1Q8N8Q1 229 aa19.93■□□□□ 0.78
HMGB1-205ENST00000399494 ZNF680Q8NEM1 530 aa19.93■□□□□ 0.78
HMGB1-205ENST00000399494 LINC00467Q9BRT7 94 aa19.93■□□□□ 0.78
HMGB1-205ENST00000399494 A0A1B0GVG6 124 aa19.92■□□□□ 0.78
HMGB1-205ENST00000399494 F5H768 121 aa19.92■□□□□ 0.78
HMGB1-205ENST00000399494 ZFP69Q49AA0 526 aa19.92■□□□□ 0.78
HMGB1-205ENST00000399494 TREM1Q9NP99 234 aa19.92■□□□□ 0.78
HMGB1-205ENST00000399494 IGHV1OR15-1A0A075B7D0 117 aa19.91■□□□□ 0.78
HMGB1-205ENST00000399494 FAM74A7A6NL05 159 aa19.91■□□□□ 0.78
HMGB1-205ENST00000399494 A0A1B0GV50 99 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 NUDT3O95989 172 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 H2AFB1P0C5Y9 115 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 Q6ZQT7 251 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 SLC51BQ86UW2 128 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 C6orf223Q8N319 242 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 MBD3L1Q8WWY6 194 aa19.9■□□□□ 0.78
HMGB1-205ENST00000399494 C16orf90A8MZG2 172 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 F6UZH7 168 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 ATP5G1P05496 136 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 ATP5G3P48201 142 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms