RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 IGHV1-18A0A0C4DH31 117 aa10.76□□□□□ -0.69
COL6A3-202ENST00000347401 BDP1A6H8Y1 2624 aa10.76□□□□□ -0.69
COL6A3-202ENST00000347401 MRPL55Q7Z7F7 128 aaKnown RBP10.76□□□□□ -0.69
COL6A3-202ENST00000347401 GGNQ86UU5 652 aa10.76□□□□□ -0.69
COL6A3-202ENST00000347401 S4R3C0 116 aa10.76□□□□□ -0.69
COL6A3-202ENST00000347401 C12orf74Q32Q52 190 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 C15orf53Q8NAA6 179 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 SPAARA0A1B0GVQ0 90 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 CLPSL1A2RUU4 121 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 BAALCQ8WXS3 180 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 ZFP36L1Q07352 338 aaKnown RBP10.75□□□□□ -0.69
COL6A3-202ENST00000347401 TMEM243Q9BU79 118 aa10.75□□□□□ -0.69
COL6A3-202ENST00000347401 TRAV25A0A0B4J276 109 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 CFHR2P36980 270 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 Q71RC1 249 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-202ENST00000347401 ZNF837Q96EG3 531 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-202ENST00000347401 SDHAF1A6NFY7 115 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 ATP5EP56381 51 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-202ENST00000347401 CRLF1O75462 422 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 ABCA2Q9BZC7 2435 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 TGFBR3LH3BV60 316 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 IGLC7A0M8Q6 106 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 LINC00473A8K010 186 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 JMJD7-PLA2G4BH0Y9G9 81 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 RNF114Q9Y508 228 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-202ENST00000347401 K7EM74 188 aa10.74□□□□□ -0.69
COL6A3-202ENST00000347401 A0A0B4J2C4 111 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 FAM27E3Q08E93 113 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 CRYBA4P53673 196 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 C8orf31Q8N9H6 132 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 B5MCH6 92 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 IGHV3-11P01762 117 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 PRR25Q96S07 402 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 LINC00311Q8N616 119 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 C9orf106Q8NAJ2 232 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 TRAV12-1A0A0B4J245 112 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 ZNF134P52741 427 aa10.73□□□□□ -0.69
COL6A3-202ENST00000347401 PATE3B3GLJ2 98 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 CFC1BP0CG36 223 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 CFC1P0CG37 223 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 CTSBP07858 339 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 EFNA4P52798 201 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 MORN5Q5VZ52 161 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 PSPNO60542 156 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 FLVCR1-AS1Q8TAF5 88 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 CFHR4Q92496 578 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 MUC6Q6W4X9 2439 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 ZNF833PQ6ZTB9 187 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 H3BT86 120 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 LTAP01374 205 aa10.72□□□□□ -0.69
COL6A3-202ENST00000347401 MRPL35Q9NZE8 188 aaKnown RBP10.72□□□□□ -0.69
COL6A3-202ENST00000347401 B4DSR2 109 aa10.71□□□□□ -0.69
COL6A3-202ENST00000347401 WFDC9Q8NEX5 89 aa10.71□□□□□ -0.69
COL6A3-202ENST00000347401 CSRP2Q16527 193 aa10.71□□□□□ -0.69
COL6A3-202ENST00000347401 SH2D6Q7Z4S9 175 aa10.71□□□□□ -0.69
COL6A3-202ENST00000347401 WDR87Q6ZQQ6 2873 aa10.71□□□□□ -0.69
COL6A3-202ENST00000347401 SS18L2Q9UHA2 77 aa10.71□□□□□ -0.7
COL6A3-202ENST00000347401 METRNQ9UJH8 293 aa10.71□□□□□ -0.7
COL6A3-202ENST00000347401 H3BUA1 57 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 SPACA3Q8IXA5 215 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 Q8TAT8 98 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 NDUFA4O00483 81 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 Q8TCH9 128 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 SCRT2Q9NQ03 307 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 LINC01560Q8TB33 94 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 IGHV3OR16-8A0A075B7F1 116 aa10.7□□□□□ -0.7
COL6A3-202ENST00000347401 FAM110DQ8TAY7 271 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-202ENST00000347401 VWC2Q2TAL6 325 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 NDUFS7O75251 213 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 CELA3AP09093 270 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 C11orf44Q8N8P7 122 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 SLC25A29Q8N8R3 303 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 RHPN1-AS1Q9BWJ2 59 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 ZFYVE26Q68DK2 2539 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 GPR179Q6PRD1 2367 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 C9JQL5 133 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 CD177Q8N6Q3 437 aa10.69□□□□□ -0.7
COL6A3-202ENST00000347401 K7ERS5 55 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 BRK1Q8WUW1 75 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 H3BRN7 92 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 ZNF747Q9BV97 191 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 IGHV1OR15-1A0A075B7D0 117 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 SMKR1H3BMG3 65 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 TAX1BP3O14907 124 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 BAALC-AS2P0C853 105 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-202ENST00000347401 PRSS57Q6UWY2 283 aa10.68□□□□□ -0.7
COL6A3-202ENST00000347401 ATP5EP2Q5VTU8 51 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 PAX9P55771 341 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 GAFA1Q96PS6 74 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 ZNF672Q499Z4 452 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-202ENST00000347401 FAM201AQ5SY85 155 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 LRP4O75096 1905 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 APOC4P55056 127 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 SELENOKQ9Y6D0 94 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 IGHV3-73A0A0B4J1V6 119 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 G3V4G9 280 aa10.67□□□□□ -0.7
COL6A3-202ENST00000347401 ETV2O00321 342 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 PIP4P2Q8N4L2 257 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms