RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 OR52L1Q8NGH7 329 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CMTM2Q8TAZ6 248 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 FNDC9Q8TBE3 224 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 OR5P3Q8WZ94 311 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CCL13Q99616 98 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 NAA38Q9BRA0 125 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 BOLA2Q9H3K6 86 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 BET1LQ9NYM9 111 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TAS2R8Q9NYW2 309 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 NAT8Q9UHE5 227 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HSPB8Q9UJY1 196 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HHLA2Q9UM44 414 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 PKIGQ9Y2B9 76 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 COQ4Q9Y3A0 265 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 NSD1Q96L73 2696 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 DOCK6Q96HP0 2047 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TCHHQ07283 1943 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 CEP192Q8TEP8 1941 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 RYR2Q92736 4967 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 KANTRA0A1W2PQU2 76 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 A0A1W2PRS3 328 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 OR6C6A6NF89 314 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TLCD2A6NGC4 264 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 OR4C45A6NMZ5 311 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF727A8MUV8 499 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF878C9JN71 531 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF670-ZNF695F2Z2N8 137 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 H3BQ15 152 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 C15orf65H3BRN8 121 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 H7BYZ3 331 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 C19orf84I3L1E1 186 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 SLC17A3O00476 420 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 PIRO00625 290 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 SLC25A20O43772 301 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 IGHV3-53P01767 116 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 CXCL1P09341 107 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MPC1LP0DKB6 136 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 FGF6P10767 208 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 LGALS3P17931 250 aaKnown RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 GPX2P18283 190 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 HINT1P49773 126 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 CAV3P56539 151 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 PIGPP57054 158 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TAS2R30P59541 319 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H1AQ02539 215 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 HSD52Q0P140 79 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 EIF3IQ13347 325 aaKnown RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MORN2Q502X0 79 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 SPANXN3Q5MJ09 141 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 AADACL3Q5VUY0 350 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TMEM42Q69YG0 159 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 HCP5Q6MZN7 132 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 LYZL2Q7Z4W2 148 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 GKN2Q86XP6 184 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TCTEX1D1Q8N7M0 179 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 PLPP5Q8NEB5 264 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 SLC30A7Q8NEW0 376 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 OR5D16Q8NGK9 328 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MUCL1Q96DR8 90 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 GNPNAT1Q96EK6 184 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MGLLQ99685 303 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 DERL1Q9BUN8 251 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 VAMP8Q9BV40 100 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF471Q9BX82 626 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 SMIM3Q9BZL3 60 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ATG5Q9H1Y0 275 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TCEAL2Q9H3H9 227 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 LYRM2Q9NU23 88 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MRPL27Q9P0M9 148 aaKnown RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ERG28Q9UKR5 140 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF443Q9Y2A4 671 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-201ENST00000326004 LAMTOR2Q9Y2Q5 125 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 MYH1P12882 1939 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 DLG5Q8TDM6 1919 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 TRPM6Q9BX84 2022 aa1.56□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF106Q9H2Y7 1883 aaKnown RBP1.55□□□□□ -2.16
HMGB1-201ENST00000326004 NYNRINQ9P2P1 1898 aaKnown RBP1.55□□□□□ -2.16
HMGB1-201ENST00000326004 A0A087WX48 190 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 IGHV1-69-2A0A0G2JMI3 117 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 A0A0G2JMM0 328 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 A0A1B0GV50 99 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 A0A1W2PPB8 328 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 GGT3PA6NGU5 568 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 OR51F1A6NGY5 319 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 OR2T8A6NH00 312 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 A6NIN4 97 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 KIR3DP1A8MWS1 328 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 UMAD1C9J7I0 102 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 E7EQ34 232 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 PPP5D1E7EU14 171 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 COX7A2LO14548 114 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 TAX1BP3O14907 124 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 HMGB3O15347 200 aaKnown RBP1.55□□□□□ -2.16
HMGB1-201ENST00000326004 HCRTO43612 131 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 IFNA1P01562 189 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 IGHMP01871 453 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 TTRP02766 147 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 IGHV3-30-3P0DP02 117 aa1.55□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H1TP22492 207 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-201ENST00000326004 ATP6V0CP27449 155 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms