RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 SONP18583 2426 aaKnown RBP10.08□□□□□ -0.8
SNX1-201ENST00000261889 G3V318 75 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 NCOR1P1Q9H4R4 102 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 USP9XQ93008 2570 aaPredicted RBP10.08□□□□□ -0.8
SNX1-201ENST00000261889 TNFRSF6BO95407 300 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 FABP2P12104 132 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 NPFFR1Q9GZQ6 430 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 SEC11AP67812 179 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 PAX2Q02962 417 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 ATP5G2Q06055 141 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 HIF1ANQ9NWT6 349 aa10.08□□□□□ -0.8
SNX1-201ENST00000261889 F8W735 103 aaPredicted RBP10.07□□□□□ -0.8
SNX1-201ENST00000261889 MRPS12O15235 138 aaKnown RBP10.07□□□□□ -0.8
SNX1-201ENST00000261889 HSD52Q0P140 79 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 ZNF575Q86XF7 245 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 TRBV25-1A0A075B6N4 114 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 NBR2O15453 112 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 IGHG4P01861 327 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 NUP37Q8NFH4 326 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 RNF185Q96GF1 192 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 C21orf62Q9NYP8 219 aa10.07□□□□□ -0.8
SNX1-201ENST00000261889 INS-IGF2F8WCM5 200 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 H3BRM9 83 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 M0R381 172 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 ZNF562Q6V9R5 426 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 TSSC4Q9Y5U2 329 aaPredicted RBP10.06□□□□□ -0.8
SNX1-201ENST00000261889 ZFYVE26Q68DK2 2539 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 DTX2Q86UW9 622 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 FLNCQ14315 2725 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 G3V4G9 280 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 TNFRSF13BO14836 293 aaPredicted RBP10.06□□□□□ -0.8
SNX1-201ENST00000261889 ODF1Q14990 250 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 LINC00311Q8N616 119 aa10.06□□□□□ -0.8
SNX1-201ENST00000261889 KMT2BQ9UMN6 2715 aaPredicted RBP10.06□□□□□ -0.8
SNX1-201ENST00000261889 H3BVH4 76 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 CLEC3BP05452 202 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 SMIM13P0DJ93 91 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 SRD5A1P18405 259 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 CLEC19AQ6UXS0 136 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 MAP1LC3AQ9H492 121 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 CYSLTR1Q9Y271 337 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 HOXB4P17483 251 aaPredicted RBP10.05□□□□□ -0.8
SNX1-201ENST00000261889 LGALS9BQ3B8N2 356 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 ZNF672Q499Z4 452 aaPredicted RBP10.05□□□□□ -0.8
SNX1-201ENST00000261889 LGALS9CQ6DKI2 356 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 CLEC2AQ6UVW9 174 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 C16orf54Q6UWD8 224 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 TMEM14CQ9P0S9 112 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 TMEM219Q86XT9 240 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 HHLA3Q9XRX5 114 aa10.05□□□□□ -0.8
SNX1-201ENST00000261889 FAM208BQ5VWN6 2430 aa10.04□□□□□ -0.8
SNX1-201ENST00000261889 SMIM17P0DL12 118 aa10.04□□□□□ -0.8
SNX1-201ENST00000261889 AZU1P20160 251 aa10.04□□□□□ -0.8
SNX1-201ENST00000261889 SMIM12Q96EX1 92 aa10.04□□□□□ -0.8
SNX1-201ENST00000261889 C15orf32Q32M92 178 aa10.04□□□□□ -0.8
SNX1-201ENST00000261889 IGKV3D-20A0A0C4DH25 116 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 CTSGP08311 255 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 MFAP4P55083 255 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 RPL11P62913 178 aaKnown RBP10.03□□□□□ -0.8
SNX1-201ENST00000261889 F6UB75 175 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 IGKCP01834 107 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 HIST1H4GQ99525 98 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 PTH2Q96A98 100 aa10.03□□□□□ -0.8
SNX1-201ENST00000261889 RPL39LQ96EH5 51 aaKnown RBP10.03□□□□□ -0.8
SNX1-201ENST00000261889 C5orf64Q2M2E5 130 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 DPM3Q9P2X0 92 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 MYO18BQ8IUG5 2567 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 PAX8Q06710 450 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 SPANXN1Q5VSR9 72 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 USP24Q9UPU5 2620 aa10.02□□□□□ -0.81
SNX1-201ENST00000261889 CD3EP07766 207 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 MGPP08493 103 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 KLHL30-AS1Q8NEE0 82 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 JMJD1CQ15652 2540 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 SAMD13Q5VXD3 122 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 AGPAT4-IT1Q9H0P7 198 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 CCL21O00585 134 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 PRR9Q5T870 116 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 PVRIGQ6DKI7 326 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 ZNF493Q6ZR52 646 aa10.01□□□□□ -0.81
SNX1-201ENST00000261889 ZNF418Q8TF45 676 aaPredicted RBP10.01□□□□□ -0.81
SNX1-201ENST00000261889 NIPBLQ6KC79 2804 aaeCLIP10.01□□□□□ -0.81
SNX1-201ENST00000261889 TMEM30BQ3MIR4 351 aa10□□□□□ -0.81
SNX1-201ENST00000261889 ZNF479Q96JC4 524 aa10□□□□□ -0.81
SNX1-201ENST00000261889 VKORC1Q9BQB6 163 aa10□□□□□ -0.81
SNX1-201ENST00000261889 FBN2P35556 2912 aa10□□□□□ -0.81
SNX1-201ENST00000261889 IGLV11-55A0A075B6I3 123 aa10□□□□□ -0.81
SNX1-201ENST00000261889 C14orf178Q8N769 122 aaPredicted RBP10□□□□□ -0.81
SNX1-201ENST00000261889 APOMO95445 188 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 IGHV3-11P01762 117 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 RPL7P18124 248 aaKnown RBP9.99□□□□□ -0.81
SNX1-201ENST00000261889 ARL3P36405 182 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 KLRB1Q12918 225 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 OR9G4Q8NGQ1 327 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 ZNF502Q8TBZ5 544 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 ACACBO00763 2458 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 LOC107984156A0A0G2JMH3 177 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 VSTM5A8MXK1 200 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 SCGB2A2Q13296 93 aa9.99□□□□□ -0.81
SNX1-201ENST00000261889 ARL17AQ8IVW1 177 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms