RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 DDTP30046 118 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 TWIST1Q15672 202 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 Q6ZWC4 215 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 TP53TG3Q9ULZ0 132 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 SMIM27A0A1W2PRY6 76 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 TMEM213A2RRL7 107 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 OOSP1A8MZH6 123 aa6.64□□□□□ -1.35
VPS4B-201ENST00000238497 F8W735 103 aaPredicted RBP6.63□□□□□ -1.35
VPS4B-201ENST00000238497 SMKR1H3BMG3 65 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 M0QZK8 103 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 PSG3Q16557 428 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 A0A1W2PS18 150 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 MT-ND6P03923 174 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 HTN1P15515 57 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 COTL1Q14019 142 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 DMRTA1Q5VZB9 504 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 RBPMS2Q6ZRY4 209 aaKnown RBP6.63□□□□□ -1.35
VPS4B-201ENST00000238497 C5orf56Q8N8D9 126 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 ZNF738Q8NE65 137 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 PRSS3P2Q8NHM4 247 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 VAMP8Q9BV40 100 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 PKIAP61925 76 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 LYZL1Q6UWQ5 148 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 UNQ9165/PRO28630Q6UXU0 137 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 NDFIP1Q9BT67 221 aa6.63□□□□□ -1.35
VPS4B-201ENST00000238497 F6UB75 175 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 WIPF1O43516 503 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 NCR2O95944 276 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 LTAP01374 205 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 IGLC2P0DOY2 106 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 MYCNOSP40205 109 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 OXLD1Q5BKU9 147 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 C18orf32Q8TCD1 76 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 CCDC140Q96MF4 163 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 RNF24Q9Y225 148 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 UFC1Q9Y3C8 167 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.62□□□□□ -1.35
VPS4B-201ENST00000238497 A0A1B0GUT8 65 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 G3V4G9 280 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 SH2D1AO60880 128 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 RAB4AP20338 218 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 PLP1P60201 277 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 TM4SF20Q53R12 229 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 Q6ZQT7 251 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 NIT1Q86X76 327 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 Q8N6K4 173 aa6.62□□□□□ -1.35
VPS4B-201ENST00000238497 WI2-2373I1.2A0A1W2PRP0 233 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 C14orf144Q96I85 54 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 MSRB1Q9NZV6 116 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 GPX1P07203 203 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 CRIP1P50238 77 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 ZNF502Q8TBZ5 544 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 TXN2Q99757 166 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 SRSF8Q9BRL6 282 aaKnown RBP6.61□□□□□ -1.35
VPS4B-201ENST00000238497 SMAD5-AS1Q9Y6J3 95 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 ZNF324O75467 553 aaPredicted RBP6.61□□□□□ -1.35
VPS4B-201ENST00000238497 EDN2P20800 178 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 LINC00310P59036 64 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 PSG9Q00887 426 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 TMEM78Q5T7P6 136 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 AMN1Q8IY45 258 aa6.61□□□□□ -1.35
VPS4B-201ENST00000238497 IGLV2-11P01706 119 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
VPS4B-201ENST00000238497 PAFAH1B2P68402 229 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 HIST1H1AQ02539 215 aaPredicted RBP6.6□□□□□ -1.35
VPS4B-201ENST00000238497 LINC00173Q6ZV60 143 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 NDUFA11Q86Y39 141 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 DUX3Q96PT4 197 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 MLST8Q9BVC4 326 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 TMEM14CQ9P0S9 112 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 TSSC4Q9Y5U2 329 aaPredicted RBP6.6□□□□□ -1.35
VPS4B-201ENST00000238497 TRBV9A0A0B4J1U6 114 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 C3orf79P0CE67 100 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 EVI2AP22794 236 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 S100A4P26447 101 aaKnown RBP6.6□□□□□ -1.35
VPS4B-201ENST00000238497 RIGQ13278 110 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 KLHL30-AS1Q8NEE0 82 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 WIPF2Q8TF74 440 aaPredicted RBP6.6□□□□□ -1.35
VPS4B-201ENST00000238497 KCNS1Q96KK3 526 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 PPP1R14DQ9NXH3 145 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 KLF12Q9Y4X4 402 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 AGRNO00468 2067 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 TCAPO15273 167 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 SNAI2O43623 268 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 BUB3O43684 328 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 IGF1P05019 195 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 FAM162BQ5T6X4 162 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 FA2HQ7L5A8 372 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 Q8N2B8 174 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 OR8A1Q8NGG7 326 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 PRR25Q96S07 402 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 ZFP30Q9Y2G7 519 aa6.6□□□□□ -1.35
VPS4B-201ENST00000238497 TRAV9-1A0A075B6T8 112 aa6.59□□□□□ -1.35
VPS4B-201ENST00000238497 EBI3Q14213 229 aa6.59□□□□□ -1.35
VPS4B-201ENST00000238497 COA6Q5JTJ3 125 aaKnown RBP6.59□□□□□ -1.35
VPS4B-201ENST00000238497 C8orf86Q6ZUL3 223 aa6.59□□□□□ -1.35
VPS4B-201ENST00000238497 ALKBH7Q9BT30 221 aaPredicted RBP6.59□□□□□ -1.35
VPS4B-201ENST00000238497 IGLL1P15814 213 aa6.59□□□□□ -1.35
VPS4B-201ENST00000238497 CKS2P33552 79 aa6.59□□□□□ -1.35
VPS4B-201ENST00000238497 FAM231DQ6ZW35 169 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 181.4 ms