RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 CKS2P33552 79 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 HNRNPA3P51991 378 aaKnown RBP12.34□□□□□ -0.43
UBE3D-201ENST00000237186 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 GPHB5Q86YW7 130 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 NPFFR1Q9GZQ6 430 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 LAMTOR2Q9Y2Q5 125 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 LRRK2Q5S007 2527 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 ZFHX3Q15911 3703 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 A0A096LNJ9 63 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 MUC21A0A0G2JKD1 596 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 MUC21A0A140T8X8 626 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 SOCS3O14543 225 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 TCAPO15273 167 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 RPLP1P05386 114 aaKnown RBP12.33□□□□□ -0.44
UBE3D-201ENST00000237186 MUC21Q5SSG8 566 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 Q6ZS46 218 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 LINC00477Q96M19 166 aa12.33□□□□□ -0.44
UBE3D-201ENST00000237186 A0A096LNT2 108 aa12.32□□□□□ -0.44
UBE3D-201ENST00000237186 OR4X2Q8NGF9 303 aa12.32□□□□□ -0.44
UBE3D-201ENST00000237186 NRGNQ92686 78 aa12.32□□□□□ -0.44
UBE3D-201ENST00000237186 MSRB1Q9NZV6 116 aa12.32□□□□□ -0.44
UBE3D-201ENST00000237186 SPG11Q96JI7 2443 aa12.32□□□□□ -0.44
UBE3D-201ENST00000237186 UTP20O75691 2785 aaKnown RBP12.32□□□□□ -0.44
UBE3D-201ENST00000237186 LINC01546A6NGU7 62 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 PF4V1P10720 104 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 FAM106AQ4KMX7 169 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 LINC01356Q8N9X3 169 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 OVOL1O14753 267 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 TCF21O43680 179 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 C20orf173Q96LM9 149 aa12.31□□□□□ -0.44
UBE3D-201ENST00000237186 IGHV4-4A0A075B6R2 117 aa12.3□□□□□ -0.44
UBE3D-201ENST00000237186 LOC389332A0A1B0GUA5 103 aa12.3□□□□□ -0.44
UBE3D-201ENST00000237186 J3QLI3 93 aa12.3□□□□□ -0.44
UBE3D-201ENST00000237186 NPYP01303 97 aa12.3□□□□□ -0.44
UBE3D-201ENST00000237186 LOXL1Q08397 574 aaPredicted RBP12.3□□□□□ -0.44
UBE3D-201ENST00000237186 MS4A6AQ9H2W1 248 aa12.3□□□□□ -0.44
UBE3D-201ENST00000237186 IGHV7-4-1A0A0J9YVY3 117 aa12.29□□□□□ -0.44
UBE3D-201ENST00000237186 IGHV3-11P01762 117 aa12.29□□□□□ -0.44
UBE3D-201ENST00000237186 COL5A1-AS1Q5SY13 56 aa12.29□□□□□ -0.44
UBE3D-201ENST00000237186 K7EMT4 169 aa12.29□□□□□ -0.44
UBE3D-201ENST00000237186 SNAI2O43623 268 aa12.29□□□□□ -0.44
UBE3D-201ENST00000237186 TMEM89A2RUT3 159 aa12.28□□□□□ -0.44
UBE3D-201ENST00000237186 SMKR1H3BMG3 65 aa12.28□□□□□ -0.44
UBE3D-201ENST00000237186 HBDP02042 147 aa12.28□□□□□ -0.44
UBE3D-201ENST00000237186 PRSS57Q6UWY2 283 aa12.28□□□□□ -0.44
UBE3D-201ENST00000237186 ZNF738Q8NE65 137 aa12.28□□□□□ -0.44
UBE3D-201ENST00000237186 TRBV7-9A0A0J9YWB2 115 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 HSBP1L1C9JCN9 74 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 APRG1Q8IVJ8 170 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 DEFB125Q8N687 156 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 ZFAND2AQ8N6M9 145 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 FAM19A4Q96LR4 140 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 MAP1LC3AQ9H492 121 aa12.27□□□□□ -0.44
UBE3D-201ENST00000237186 DAZ1Q9NQZ3 744 aaKnown RBP12.27□□□□□ -0.44
UBE3D-201ENST00000237186 hDV102S1A0JD36 115 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 PSMB8P28062 276 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 CACNG7P62955 275 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 FOXE3Q13461 319 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 DEFB112Q30KQ8 113 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 OR10J6PQ8NGY7 276 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 RHPN1-AS1Q9BWJ2 59 aa12.27□□□□□ -0.45
UBE3D-201ENST00000237186 PEF1Q9UBV8 284 aaKnown RBP12.27□□□□□ -0.45
UBE3D-201ENST00000237186 PRSS47A8MTI9 375 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 NCR2O95944 276 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 LGALS9BQ3B8N2 356 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 PRR9Q5T870 116 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 LGALS9CQ6DKI2 356 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 SMPXQ9UHP9 88 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 CRYBG3Q68DQ2 2970 aa12.26□□□□□ -0.45
UBE3D-201ENST00000237186 TNFRSF6BO95407 300 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 BATFQ16520 125 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 LCNL1Q6ZST4 164 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 DPF1Q92782 380 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 NXT2Q9NPJ8 142 aaKnown RBP12.25□□□□□ -0.45
UBE3D-201ENST00000237186 SCRT2Q9NQ03 307 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 TRAV21A0A0B4J279 112 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 IGHV4-59P01825 116 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 TM4SF20Q53R12 229 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 SAMD13Q5VXD3 122 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 SMIM15Q7Z3B0 74 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 STPG4Q8N801 248 aa12.25□□□□□ -0.45
UBE3D-201ENST00000237186 SLC25A34Q6PIV7 304 aa12.24□□□□□ -0.45
UBE3D-201ENST00000237186 MCRIP2Q9BUT9 160 aaKnown RBP12.24□□□□□ -0.45
UBE3D-201ENST00000237186 TIMM8BQ9Y5J9 83 aaPredicted RBP12.24□□□□□ -0.45
UBE3D-201ENST00000237186 GAS8-AS1O95177 125 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 EVI2AP22794 236 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 GAGE1Q13065 139 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 Q6ZQT7 251 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 OR8A1Q8NGG7 326 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.23□□□□□ -0.456e-9■■■■□ 26.2
UBE3D-201ENST00000237186 H0Y8G0 127 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 FSHBP01225 129 aa12.23□□□□□ -0.45
UBE3D-201ENST00000237186 CELSR1Q9NYQ6 3014 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 IGLV2-18A0A075B6J9 118 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 TGFAP01135 160 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 MED14OSP0DP75 135 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 ZNF25P17030 456 aaPredicted RBP12.22□□□□□ -0.45
UBE3D-201ENST00000237186 FCER1GP30273 86 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 PMCHL2Q9BQD1 86 aa12.22□□□□□ -0.45
UBE3D-201ENST00000237186 TMEM208Q9BTX3 173 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 299.4 ms