RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PEX7O00628 323 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 APOC4P55056 127 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 TAS2R60P59551 318 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 SRSF3P84103 164 aaKnown RBP7.26□□□□□ -1.25
CLN3-261ENST00000637686 PSMG4Q5JS54 123 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 SOHLH1Q5JUK2 328 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 C10orf91Q5T1B1 145 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 SLC7A5P1Q8MH63 180 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 TMEM75Q8N9X5 138 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 WWC2-AS2Q96NR7 200 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 LY96Q9Y6Y9 160 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 KIR2DL5BA0A0G2JN68 375 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 KIR2DL5BA0A0G2JPC4 375 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 SCO2A0A1W2PP80 73 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 C9JQL5 133 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 H3BTX0 84 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 UBE2CO00762 179 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 SFTA3P0C7M3 94 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 AKR1C3P42330 323 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 CNN1P51911 297 aaKnown RBP7.25□□□□□ -1.25
CLN3-261ENST00000637686 TMEM183BQ1AE95 376 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 STHQ8IWL8 128 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 KIR2DL5AQ8N109 375 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 EXOC3-AS1Q8N2X6 119 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 KIR2DL5BQ8NHK3 375 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 FMC1Q96HJ9 113 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 LINC00052Q96N35 136 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 CSTL1Q9H114 145 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 CARHSP1Q9Y2V2 147 aaKnown RBP7.25□□□□□ -1.25
CLN3-261ENST00000637686 LENEPQ9Y5L5 61 aa7.25□□□□□ -1.25
CLN3-261ENST00000637686 M0R3E3 92 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 S100A1P23297 94 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 PNRC1Q12796 327 aaPredicted RBP7.24□□□□□ -1.25
CLN3-261ENST00000637686 ACTL10Q5JWF8 245 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 C9orf47Q6ZRZ4 202 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 COX8CQ7Z4L0 72 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 CLUHP3Q96NS8 147 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 ODF3Q96PU9 254 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 OVOL2Q9BRP0 275 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 PARLQ9H300 379 aa7.24□□□□□ -1.25
CLN3-261ENST00000637686 NBEAL2Q6ZNJ1 2754 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 SNRPCP09234 159 aaKnown RBP7.23□□□□□ -1.25
CLN3-261ENST00000637686 RPL35P42766 123 aaKnown RBP7.23□□□□□ -1.25
CLN3-261ENST00000637686 UBE2G1P62253 170 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 DEFB135Q30KP9 77 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 FOXI2Q6ZQN5 318 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 Q6ZWC4 215 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 TRPT1Q86TN4 253 aaKnown RBP7.23□□□□□ -1.25
CLN3-261ENST00000637686 LINC00477Q96M19 166 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 SMIM7Q9BQ49 75 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 NIPSNAP3BQ9BS92 247 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 ZFP30Q9Y2G7 519 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 AGRNO00468 2067 aa7.23□□□□□ -1.25
CLN3-261ENST00000637686 TENM3Q9P273 2699 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 A8MTW9 85 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 ZNF727A8MUV8 499 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 NPIPB6E9PJ23 425 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 F8W036 122 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 SPRY2O43597 315 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 DUSP14O95147 198 aaKnown RBP7.22□□□□□ -1.25
CLN3-261ENST00000637686 LTAP01374 205 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 IGLV2-11P01706 119 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 ADCYAP1P18509 176 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 DEFB1P60022 68 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 FLI1Q01543 452 aaPredicted RBP7.22□□□□□ -1.25
CLN3-261ENST00000637686 SAPCD1Q5SSQ6 148 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 GDF5OSQ5U4N7 250 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 GOLT1AQ6ZVE7 132 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 ZNF738Q8NE65 137 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 OR8A1Q8NGG7 326 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 OR10J6PQ8NGY7 276 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 RNF183Q96D59 192 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 C20orf173Q96LM9 149 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 IGF2BP2-AS1Q96M15 143 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 EDA2RQ9HAV5 297 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 BIN3Q9NQY0 253 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 NAT8Q9UHE5 227 aa7.22□□□□□ -1.25
CLN3-261ENST00000637686 H3BMM0 161 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 ATP6V1G1O75348 118 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 CA1P00915 261 aaPredicted RBP7.21□□□□□ -1.26
CLN3-261ENST00000637686 HLA-DRB4P13762 266 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 HLA-DMBP28068 263 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 GNG4P50150 75 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 GNG5P63218 68 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 TMEM241Q24JQ0 296 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 IGFL4Q6B9Z1 124 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 Q86TA4 180 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 RNF182Q8N6D2 247 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 TVP23CQ96ET8 276 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 NDFIP1Q9BT67 221 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 MLST8Q9BVC4 326 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 SAV1Q9H4B6 383 aaPredicted RBP7.21□□□□□ -1.26
CLN3-261ENST00000637686 SDF2L1Q9HCN8 221 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 PSG8Q9UQ74 426 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 TP53TG1Q9Y2A0 90 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 HLA-DRB4X5D2U9 266 aa7.21□□□□□ -1.26
CLN3-261ENST00000637686 A0A0J9YX75 114 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 ZNF705FA8MVS1 300 aaPredicted RBP7.2□□□□□ -1.26
CLN3-261ENST00000637686 B4DEV8 164 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 F6UB75 175 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms