RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 TSSC4Q9Y5U2 329 aaPredicted RBP10.84□□□□□ -0.67
CLN3-242ENST00000635958 A0A1W2PS18 150 aa10.83□□□□□ -0.68
CLN3-242ENST00000635958 UBE2L3P68036 154 aaKnown RBP10.83□□□□□ -0.68
CLN3-242ENST00000635958 FAM167A-AS1Q96KT0 104 aa10.83□□□□□ -0.68
CLN3-242ENST00000635958 PAXXQ9BUH6 204 aa10.83□□□□□ -0.68
CLN3-242ENST00000635958 HIGD1AQ9Y241 93 aa10.83□□□□□ -0.68
CLN3-242ENST00000635958 IGHV3-35A0A0C4DH35 117 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 DLEU1O43261 78 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 MGST1P10620 155 aaKnown RBP10.82□□□□□ -0.68
CLN3-242ENST00000635958 C18orf65Q6ZTR6 163 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 LINC00305Q7Z4B0 112 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 S100A7AQ86SG5 101 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 CITED2Q99967 270 aaPredicted RBP10.82□□□□□ -0.68
CLN3-242ENST00000635958 SLC25A2Q9BXI2 301 aa10.82□□□□□ -0.68
CLN3-242ENST00000635958 RNASE7Q9H1E1 156 aaKnown RBP10.82□□□□□ -0.68
CLN3-242ENST00000635958 KRTAP10-3P60369 221 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 CT83Q5H943 113 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 SLC25A39Q9BZJ4 359 aaPredicted RBP10.81□□□□□ -0.68
CLN3-242ENST00000635958 IGHV4OR15-8A0A075B7B6 117 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 A0A087WW49 117 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 PEX7O00628 323 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 ZNF25P17030 456 aaPredicted RBP10.81□□□□□ -0.68
CLN3-242ENST00000635958 CTRLP40313 264 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 KRTDAPP60985 99 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 FAM106AQ4KMX7 169 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 MORN5Q5VZ52 161 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 C11orf44Q8N8P7 122 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 KLHL30-AS1Q8NEE0 82 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 SHANK2-AS3Q9BTD1 123 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 RABAC1Q9UI14 185 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 PAM16Q9Y3D7 125 aa10.81□□□□□ -0.68
CLN3-242ENST00000635958 H3BRN7 92 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 SRIP30626 198 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 S100A7P31151 101 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 KHDC1LQ5JSQ8 128 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 UNQ9165/PRO28630Q6UXU0 137 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 TSKUQ8WUA8 353 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 GOLT1BQ9Y3E0 138 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 U3KQE9 123 aa10.8□□□□□ -0.68
CLN3-242ENST00000635958 FAM231BA6NCW3 169 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 ADARB2-AS1A8MUL3 147 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 LINC01619G3V211 115 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 K7EMT4 169 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 LGALS9O00182 355 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 KRTAP24-1Q3LI83 254 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 SPATA45Q537H7 98 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 Q8N976 141 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 OR11H1Q8NG94 326 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 OR1N2Q8NGR9 330 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 RNF24Q9Y225 148 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 KLF12Q9Y4X4 402 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 TRAV5A0A0B4J249 113 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 HOXD3P31249 432 aaPredicted RBP10.79□□□□□ -0.68
CLN3-242ENST00000635958 ATG101Q9BSB4 218 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 ZNF492Q9P255 531 aa10.79□□□□□ -0.68
CLN3-242ENST00000635958 COL6A5A8TX70 2615 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 FBN1P35555 2871 aaKnown RBP10.78□□□□□ -0.68
CLN3-242ENST00000635958 MYCNOSP40205 109 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 UBE2G1P62253 170 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 FHL3Q13643 280 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 HIST2H2BDQ6DRA6 164 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 C8orf86Q6ZUL3 223 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 NDUFA11Q86Y39 141 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 DPF1Q92782 380 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 METTL26Q96S19 204 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 TMEM208Q9BTX3 173 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 GFRA4Q9GZZ7 299 aa10.78□□□□□ -0.68
CLN3-242ENST00000635958 MRPS16Q9Y3D3 137 aaKnown RBP10.78□□□□□ -0.68
CLN3-242ENST00000635958 IGHV3OR16-8A0A075B7F1 116 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 A8MWL6 223 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 BUB3O43684 328 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 PMCHP20382 165 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 DEFB136Q30KP8 78 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 MRPL54Q6P161 138 aaKnown RBP10.77□□□□□ -0.68
CLN3-242ENST00000635958 NIT1Q86X76 327 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 NUDT10Q8NFP7 164 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 C18orf32Q8TCD1 76 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 NUDT11Q96G61 164 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 FMC1Q96HJ9 113 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 RAX2Q96IS3 184 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 TMEM14CQ9P0S9 112 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 EPDR1Q9UM22 224 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 ZFP30Q9Y2G7 519 aa10.77□□□□□ -0.68
CLN3-242ENST00000635958 TENM1Q9UKZ4 2725 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 HSBP1O75506 76 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 C3orf79P0CE67 100 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 IGLC2P0DOY2 106 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 IGLC3P0DOY3 106 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 FXYD5Q96DB9 178 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 GPR82Q96P67 336 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 DAZ1Q9NQZ3 744 aaKnown RBP10.77□□□□□ -0.69
CLN3-242ENST00000635958 UFC1Q9Y3C8 167 aa10.77□□□□□ -0.69
CLN3-242ENST00000635958 TRBV6-1A0A0K0K1D8 114 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 F2Z2F3 143 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 CCL24O00175 119 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 MRPS12O15235 138 aaKnown RBP10.76□□□□□ -0.69
CLN3-242ENST00000635958 HNRNPA3P51991 378 aaKnown RBP10.76□□□□□ -0.69
CLN3-242ENST00000635958 LEMD1Q68G75 181 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 NUP35Q8NFH5 326 aa10.76□□□□□ -0.69
CLN3-242ENST00000635958 CHCHD1Q96BP2 118 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms