RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 MRPS16Q9Y3D3 137 aaKnown RBP10.85□□□□□ -0.67
SHKBP1-228ENST00000602239 C7orf71A4D174 169 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 FGF7P21781 194 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 RNASE4P34096 147 aaKnown RBP10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 S100A10P60903 97 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 EXOC3-AS1Q8N2X6 119 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 CHAC2Q8WUX2 184 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 BLNKQ8WV28 456 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 MRPL53Q96EL3 112 aaKnown RBP10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 KLF12Q9Y4X4 402 aa10.84□□□□□ -0.67
SHKBP1-228ENST00000602239 TRGV2A0A075B6R0 118 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 KLLNB2CW77 178 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 HIST1H1EP10412 219 aaKnown RBP10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 PVALBP20472 110 aaPredicted RBP10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 TTC32Q5I0X7 151 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 LINC00477Q96M19 166 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 TMEM14CQ9P0S9 112 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 TIMM9Q9Y5J7 89 aa10.83□□□□□ -0.68
SHKBP1-228ENST00000602239 IGKV2-40A0A087WW87 121 aaPredicted RBP10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 TRGV1A0A0A0MS02 117 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 IGKV2D-40P01614 121 aaPredicted RBP10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 H2AFB2P0C5Z0 115 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 PRR9Q5T870 116 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 VGLL1Q99990 258 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 TP53TG3Q9ULZ0 132 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 FUT9Q9Y231 359 aa10.82□□□□□ -0.68
SHKBP1-228ENST00000602239 A0A1W2PPQ1 181 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 NHLH2Q02577 135 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 ICAM4Q14773 271 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 ANXA2RQ3ZCQ2 193 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 STX12Q86Y82 276 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 EIF4E3Q8N5X7 224 aaKnown RBP10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 ZFAND2AQ8N6M9 145 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 ZNF680Q8NEM1 530 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 FAM167A-AS1Q96KT0 104 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 C18orf15Q96N68 181 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 LINC00467Q9BRT7 94 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 SLC25A2Q9BXI2 301 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 GPN1Q9HCN4 374 aaPredicted RBP10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 PRELID1Q9Y255 219 aa10.81□□□□□ -0.68
SHKBP1-228ENST00000602239 SPINK4O60575 86 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 MPDU1O75352 247 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 GPX1P07203 203 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 HBG1P69891 147 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 HBG2P69892 147 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 PDE6HQ13956 83 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 ATP6V1FQ16864 119 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 FAM122CQ6P4D5 195 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 C9orf47Q6ZRZ4 202 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 Q8N1X5 172 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 NPCDR1Q9BY65 106 aa10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 APOBP04114 4563 aaKnown RBP10.8□□□□□ -0.68
SHKBP1-228ENST00000602239 IGHV3-53P01767 116 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 CRISP2P16562 243 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 BTF3P20290 206 aaKnown RBP10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 TCL1AP56279 114 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 LINC00315P59091 139 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 MIR17HGQ75NE6 70 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 THAP6Q8TBB0 222 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 SCRT2Q9NQ03 307 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 TNFRSF18Q9Y5U5 241 aa10.79□□□□□ -0.68
SHKBP1-228ENST00000602239 PAX4O43316 350 aa10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 SIX6O95475 246 aa10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 NBEAP1P0C6P0 100 aa10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 Q6ZRN7 208 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 AAMDCQ9H7C9 122 aa10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 MRPL16Q9NX20 251 aaKnown RBP10.78□□□□□ -0.68
SHKBP1-228ENST00000602239 DNAH5Q8TE73 4624 aa10.77□□□□□ -0.68
SHKBP1-228ENST00000602239 FAM240BA0A1B0GVZ2 78 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 RGS13O14921 159 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 SIVA1O15304 175 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 FUSP35637 526 aaKnown RBP eCLIP10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 TMEM78Q5T7P6 136 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 OR5C1Q8NGR4 320 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 ST6GAL2Q96JF0 529 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 ZNF492Q9P255 531 aa10.77□□□□□ -0.69
SHKBP1-228ENST00000602239 IGHV1OR15-1A0A075B7D0 117 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 NMBP08949 121 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 OR10J4P0C629 311 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 IBA57Q5T440 356 aaKnown RBP10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 Q8TAT8 98 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 FXYD5Q96DB9 178 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 CCDC32Q9BV29 185 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 OR51M1Q9H341 326 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 OR5AC2Q9NZP5 309 aa10.76□□□□□ -0.69
SHKBP1-228ENST00000602239 H0YIZ8 118 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 NXPH4O95158 308 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 CRYBA4P53673 196 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 FHL2Q14192 279 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 PHYHIPLQ96FC7 376 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 C8orf49Q96NF6 230 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 PAXXQ9BUH6 204 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 ICOSQ9Y6W8 199 aa10.75□□□□□ -0.69
SHKBP1-228ENST00000602239 PRAF2O60831 178 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 ZNF138P52744 262 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 LYPD5Q6UWN5 251 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 MDFICQ9P1T7 246 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 PRO0255Q9UI72 69 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 HHLA3Q9XRX5 114 aa10.74□□□□□ -0.69
SHKBP1-228ENST00000602239 LRRC37A5PQ49AS3 106 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms