RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 STAG3L3P0CL85 134 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 HTN1P15515 57 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 AZU1P20160 251 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 TMEM78Q5T7P6 136 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 OR11H4Q8NGC9 324 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 FAM19A4Q96LR4 140 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 CYTL1Q9NRR1 136 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 ALMS1Q8TCU4 4167 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 SACSQ9NZJ4 4579 aa9.9□□□□□ -0.83
UPF1-205ENST00000598209 TRAV12-3A0A0B4J271 114 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 PGPA6NDG6 321 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 HMSDA8MTL9 139 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 H7BYZ3 331 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 SLC25A5P05141 298 aaKnown RBP9.89□□□□□ -0.83
UPF1-205ENST00000598209 ZNF345Q14585 488 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 KCNRGQ8N5I3 272 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 HYLS1Q96M11 299 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 NIPSNAP3BQ9BS92 247 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 ACTR3CQ9C0K3 210 aaPredicted RBP9.89□□□□□ -0.83
UPF1-205ENST00000598209 OTORQ9NRC9 128 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 PLA2G2EQ9NZK7 142 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 ZNF492Q9P255 531 aa9.89□□□□□ -0.83
UPF1-205ENST00000598209 PLECQ15149 4684 aaKnown RBP9.89□□□□□ -0.83
UPF1-205ENST00000598209 DEFB131BA0A096LNP1 70 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 C7orf71A4D174 169 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 RBAKDNA6NC62 111 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 KLLNB2CW77 178 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 IGLL5B9A064 214 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 DIRC3C9JPN6 131 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 CRISP2P16562 243 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 GCHFRP30047 84 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 FAM74A1Q5RGS3 127 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 SSX7Q7RTT5 188 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 RXFP4Q8TDU9 374 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 C16orf74Q96GX8 76 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 ARPC5LQ9BPX5 153 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 RYR3Q15413 4870 aa9.88□□□□□ -0.83
UPF1-205ENST00000598209 PLAC8L1A1L4L8 177 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 CXorf1O96002 111 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 ZNF138P52744 262 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 CD300CQ08708 224 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 AKR1C8PQ5T2L2 129 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 Q8TAT8 98 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 CMTM2Q8TAZ6 248 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 TMEM263Q8WUH6 116 aaKnown RBP9.87□□□□□ -0.83
UPF1-205ENST00000598209 LINC00476Q8WZB0 136 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 RPH3ALQ9UNE2 315 aa9.87□□□□□ -0.83
UPF1-205ENST00000598209 DNAH1Q9P2D7 4330 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 A0A0D9SG52 128 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 CTXND1A0A1B0GTU2 59 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 LYRM9A8MSI8 78 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 GPX1P07203 203 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 NMBP08949 121 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 RNASE4P34096 147 aaKnown RBP9.86□□□□□ -0.83
UPF1-205ENST00000598209 TCTAP57738 103 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 DAD1P61803 113 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 BTN1A1Q13410 526 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 ZNF726P1Q15940 193 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 Q6ZNX1 250 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 ZNF493Q6ZR52 646 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 CCDC28AQ8IWP9 274 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 ZFAND2AQ8N6M9 145 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 SUN5Q8TC36 379 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 RNASE8Q8TDE3 154 aaKnown RBP9.86□□□□□ -0.83
UPF1-205ENST00000598209 ST6GAL2Q96JF0 529 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 PYGO2Q9BRQ0 406 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 RYR2Q92736 4967 aa9.86□□□□□ -0.83
UPF1-205ENST00000598209 IGHV4-4A0A075B6R2 117 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 TRBV7-9A0A0J9YWB2 115 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 KANTRA0A1W2PQU2 76 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 LY6G6CO95867 125 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 PRR9Q5T870 116 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 IQCF2Q8IXL9 164 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 ARL6IP6Q8N6S5 226 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 TMEM167BQ9NRX6 74 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 APLNQ9ULZ1 77 aa9.85□□□□□ -0.83
UPF1-205ENST00000598209 TIMM8BQ9Y5J9 83 aaPredicted RBP9.85□□□□□ -0.83
UPF1-205ENST00000598209 BCL2L11O43521 198 aa9.84□□□□□ -0.83
UPF1-205ENST00000598209 ZNF324O75467 553 aaPredicted RBP9.84□□□□□ -0.83
UPF1-205ENST00000598209 HTN3P15516 51 aa9.84□□□□□ -0.83
UPF1-205ENST00000598209 GNG5P63218 68 aa9.84□□□□□ -0.83
UPF1-205ENST00000598209 GOLT1AQ6ZVE7 132 aa9.84□□□□□ -0.83
UPF1-205ENST00000598209 ZNF471Q9BX82 626 aaPredicted RBP9.84□□□□□ -0.83
UPF1-205ENST00000598209 DEFB130BP0DP73 79 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 DEFB130AP0DP74 79 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 TMUB2Q71RG4 321 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 TCTE3Q8IZS6 198 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 C5orf17Q8NAS9 161 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 TMED6Q8WW62 240 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 NOP10Q9NPE3 64 aaKnown RBP9.83□□□□□ -0.84
UPF1-205ENST00000598209 LENEPQ9Y5L5 61 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 HYDINQ4G0P3 5121 aa9.83□□□□□ -0.84
UPF1-205ENST00000598209 SNURFLB1AK76 121 aa9.82□□□□□ -0.84
UPF1-205ENST00000598209 PFDN1O60925 122 aa9.82□□□□□ -0.84
UPF1-205ENST00000598209 FGF8P55075 233 aaPredicted RBP9.82□□□□□ -0.84
UPF1-205ENST00000598209 SUMO1P63165 101 aaKnown RBP9.82□□□□□ -0.84
UPF1-205ENST00000598209 LGALS9CQ6DKI2 356 aa9.82□□□□□ -0.84
UPF1-205ENST00000598209 Q6ZQT7 251 aa9.82□□□□□ -0.84
UPF1-205ENST00000598209 EIF4E3Q8N5X7 224 aaKnown RBP9.82□□□□□ -0.84
UPF1-205ENST00000598209 LINC00467Q9BRT7 94 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms