RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 Q6ZTC4 211 aa10.42□□□□□ -0.74
VRK3-206ENST00000594090 ZNF767PQ75MW2 155 aa10.42□□□□□ -0.74
VRK3-206ENST00000594090 SSX7Q7RTT5 188 aa10.42□□□□□ -0.74
VRK3-206ENST00000594090 DKK2Q9UBU2 259 aa10.42□□□□□ -0.74
VRK3-206ENST00000594090 YTHDF2Q9Y5A9 579 aaKnown RBP10.42□□□□□ -0.74
VRK3-206ENST00000594090 A0A0D9SG52 128 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 TEX48A0A1B0GUV7 120 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 KLLNB2CW77 178 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 C11orf94C9JXX5 98 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 H7BYZ3 331 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 SLC25A5P05141 298 aaKnown RBP10.41□□□□□ -0.74
VRK3-206ENST00000594090 SPART-AS1P0CW21 52 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 GCHFRP30047 84 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 AKR1C8PQ5T2L2 129 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 FAM222AQ5U5X8 452 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 HYLS1Q96M11 299 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 ZNF492Q9P255 531 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 TRAV12-3A0A0B4J271 114 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 RBAKDNA6NC62 111 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 PGPA6NDG6 321 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 DIRC3C9JPN6 131 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 BCL2L11O43521 198 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 CXorf1O96002 111 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 CRISP2P16562 243 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 ZNF726P1Q15940 193 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 FAM74A1Q5RGS3 127 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 TCTE3Q8IZS6 198 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 SUN5Q8TC36 379 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 RXFP4Q8TDU9 374 aa10.41□□□□□ -0.74
VRK3-206ENST00000594090 TRAV10A0A0B4J240 114 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 CTXND1A0A1B0GTU2 59 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 KANTRA0A1W2PQU2 76 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 PLAC8L1A1L4L8 177 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 C7orf71A4D174 169 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 HTN1P15515 57 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 AZU1P20160 251 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 ZNF138P52744 262 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 BTN1A1Q13410 526 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 ZFAND2AQ8N6M9 145 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 Q8TAT8 98 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 CMTM2Q8TAZ6 248 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 C2CD4CQ8TF44 421 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 C16orf74Q96GX8 76 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 NIPSNAP3BQ9BS92 247 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 TMEM167BQ9NRX6 74 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 RPH3ALQ9UNE2 315 aa10.4□□□□□ -0.75
VRK3-206ENST00000594090 SACSQ9NZJ4 4579 aa10.39□□□□□ -0.75
VRK3-206ENST00000594090 NMBP08949 121 aa10.39□□□□□ -0.75
VRK3-206ENST00000594090 CD300CQ08708 224 aa10.39□□□□□ -0.75
VRK3-206ENST00000594090 IQCF2Q8IXL9 164 aa10.39□□□□□ -0.75
VRK3-206ENST00000594090 ARL6IP6Q8N6S5 226 aa10.39□□□□□ -0.75
VRK3-206ENST00000594090 RNASE8Q8TDE3 154 aaKnown RBP10.39□□□□□ -0.75
VRK3-206ENST00000594090 TMEM263Q8WUH6 116 aaKnown RBP10.39□□□□□ -0.75
VRK3-206ENST00000594090 ZNF471Q9BX82 626 aaPredicted RBP10.39□□□□□ -0.75
VRK3-206ENST00000594090 DYNC2H1Q8NCM8 4307 aaKnown RBP10.39□□□□□ -0.75
VRK3-206ENST00000594090 hCG_2014768A0A024R1R8 64 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 TRBV7-9A0A0J9YWB2 115 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 PRR9Q5T870 116 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 ZNF493Q6ZR52 646 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 TMUB2Q71RG4 321 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 PYGO2Q9BRQ0 406 aa10.38□□□□□ -0.75
VRK3-206ENST00000594090 DEFB131BA0A096LNP1 70 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 LYRM9A8MSI8 78 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 PFDN1O60925 122 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 ZNF324O75467 553 aaPredicted RBP10.37□□□□□ -0.75
VRK3-206ENST00000594090 GPX1P07203 203 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 RNASE4P34096 147 aaKnown RBP10.37□□□□□ -0.75
VRK3-206ENST00000594090 GNG5P63218 68 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 GOLT1AQ6ZVE7 132 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 PLA2G2EQ9NZK7 142 aa10.37□□□□□ -0.75
VRK3-206ENST00000594090 PLECQ15149 4684 aaKnown RBP10.37□□□□□ -0.75
VRK3-206ENST00000594090 TENM2Q9NT68 2774 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 GGTLC3B5MD39 225 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 SEC11BP0C7V7 166 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 DAD1P61803 113 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 CCDC28AQ8IWP9 274 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 C5orf17Q8NAS9 161 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 TMED6Q8WW62 240 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 LINC00476Q8WZB0 136 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 LYSTQ99698 3801 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 LENEPQ9Y5L5 61 aa10.36□□□□□ -0.75
VRK3-206ENST00000594090 MAP1LC3B2A6NCE7 125 aa10.35□□□□□ -0.75
VRK3-206ENST00000594090 IGLL5B9A064 214 aa10.35□□□□□ -0.75
VRK3-206ENST00000594090 C1QBP02746 253 aa10.35□□□□□ -0.75
VRK3-206ENST00000594090 FGF8P55075 233 aaPredicted RBP10.35□□□□□ -0.75
VRK3-206ENST00000594090 EIF5AP63241 154 aaKnown RBP10.35□□□□□ -0.75
VRK3-206ENST00000594090 MAP1LC3BQ9GZQ8 125 aa10.35□□□□□ -0.75
VRK3-206ENST00000594090 TIMM8BQ9Y5J9 83 aaPredicted RBP10.35□□□□□ -0.75
VRK3-206ENST00000594090 TRAV8-1A0A0A6YYK1 113 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 SERTM2A0A1B0GWG4 89 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 A0A1W2PRE2 83 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 UMAD1C9J7I0 102 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 TPT1P13693 172 aaKnown RBP10.34□□□□□ -0.75
VRK3-206ENST00000594090 FHITP49789 147 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 TCTAP57738 103 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 SUMO1P63165 101 aaKnown RBP10.34□□□□□ -0.75
VRK3-206ENST00000594090 LGALSLQ3ZCW2 172 aaPredicted RBP10.34□□□□□ -0.75
VRK3-206ENST00000594090 AKAP14Q86UN6 197 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 LINC00467Q9BRT7 94 aa10.34□□□□□ -0.75
VRK3-206ENST00000594090 TMPRSS5Q9H3S3 457 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms