RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 C16orf74Q96GX8 76 aa7.6□□□□□ -1.19
VPS4B-202ENST00000588059 PPP1R14DQ9NXH3 145 aa7.6□□□□□ -1.19
VPS4B-202ENST00000588059 MDFICQ9P1T7 246 aa7.6□□□□□ -1.19
VPS4B-202ENST00000588059 TIMM8BQ9Y5J9 83 aaPredicted RBP7.6□□□□□ -1.19
VPS4B-202ENST00000588059 ALG5Q9Y673 324 aa7.6□□□□□ -1.19
VPS4B-202ENST00000588059 SRRM2Q9UQ35 2752 aaKnown RBP7.59□□□□□ -1.19
VPS4B-202ENST00000588059 A0A0J9YY99 117 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 MPDU1O75352 247 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 MPC2O95563 127 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 PTTG1O95997 202 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 CXCL2P19875 107 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 TAS2R60P59551 318 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 KRTAP10-1P60331 282 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 OR5I1Q13606 314 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 TMEM256Q8N2U0 113 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 RNASE8Q8TDE3 154 aaKnown RBP7.59□□□□□ -1.19
VPS4B-202ENST00000588059 RPUSD4Q96CM3 377 aaKnown RBP7.59□□□□□ -1.19
VPS4B-202ENST00000588059 LINC01587Q99440 93 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 SLC50A1Q9BRV3 221 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 NPCDR1Q9BY65 106 aa7.59□□□□□ -1.19
VPS4B-202ENST00000588059 NOP10Q9NPE3 64 aaKnown RBP7.59□□□□□ -1.19
VPS4B-202ENST00000588059 SLC17A3O00476 420 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 SMR3BP02814 79 aaPredicted RBP7.58□□□□□ -1.2
VPS4B-202ENST00000588059 HOXA5P20719 270 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 ERVFC1-1P60608 527 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 LINC00612Q8N6U2 182 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 OR8A1Q8NGG7 326 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 OR10J6PQ8NGY7 276 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 CHAC2Q8WUX2 184 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 SMIM3Q9BZL3 60 aa7.58□□□□□ -1.2
VPS4B-202ENST00000588059 ZNF331Q9NQX6 463 aaPredicted RBP7.58□□□□□ -1.2
VPS4B-202ENST00000588059 C17orf112F2Z3M2 114 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 H3BNG1 76 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 H3BQ15 152 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 EREGO14944 169 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 IGLC2P0DOY2 106 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 HTN1P15515 57 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 RPL12P30050 165 aaKnown RBP7.57□□□□□ -1.2
VPS4B-202ENST00000588059 ICAM4Q14773 271 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 GCSAMLQ5JQS6 135 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 TMEM263Q8WUH6 116 aaKnown RBP7.57□□□□□ -1.2
VPS4B-202ENST00000588059 ATP5SQ99766 215 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 WDR61Q9GZS3 305 aaKnown RBP7.57□□□□□ -1.2
VPS4B-202ENST00000588059 MBD2Q9UBB5 411 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 HSPB11Q9Y547 144 aa7.57□□□□□ -1.2
VPS4B-202ENST00000588059 J3QL48 77 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 IFNA5P01569 189 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 DNAH10OSP0CZ25 163 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 GUK1Q16774 197 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 ZNF493Q6ZR52 646 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 Q6ZSN1 163 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 SCGB1C1Q8TD33 95 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 MED28Q9H204 178 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 KCNIP2Q9NS61 270 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 TIMM9Q9Y5J7 89 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 HMCN2Q8NDA2 5059 aa7.56□□□□□ -1.2
VPS4B-202ENST00000588059 PRAC2D3DTV9 90 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 PYYP10082 97 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 HAMPP81172 84 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 MIR17HGQ75NE6 70 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 BLNKQ8WV28 456 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 SAT2Q96F10 170 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-202ENST00000588059 TMEM14CQ9P0S9 112 aa7.55□□□□□ -1.2
VPS4B-202ENST00000588059 TRBV19A0A075B6N1 114 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 A0A087WTM6 91 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 A0A096LPF7 62 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 GAGE12BA1L429 117 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 FAM229AH3BQW9 127 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 SIVA1O15304 175 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 GAGE7O76087 117 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 GAGE12FP0CL80 117 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 GAGE12GP0CL81 117 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 GAGE12IP0CL82 117 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 HIST1H1EP10412 219 aaKnown RBP7.54□□□□□ -1.2
VPS4B-202ENST00000588059 FFAR4Q5NUL3 377 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 SLC25A2Q9BXI2 301 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 PARD6GQ9BYG4 376 aaPredicted RBP7.54□□□□□ -1.2
VPS4B-202ENST00000588059 TNFRSF18Q9Y5U5 241 aa7.54□□□□□ -1.2
VPS4B-202ENST00000588059 H7BYZ3 331 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 J3KRW8 73 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 ZNF253O75346 499 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 OR10J4P0C629 311 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 CDKN1BP46527 198 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 VSIG2Q96IQ7 327 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 MRPL32Q9BYC8 188 aaKnown RBP7.53□□□□□ -1.2
VPS4B-202ENST00000588059 OR51M1Q9H341 326 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 TMPRSS5Q9H3S3 457 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 FUT9Q9Y231 359 aa7.53□□□□□ -1.2
VPS4B-202ENST00000588059 M0R3E3 92 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 OR7C2O60412 319 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 NXPH4O95158 308 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 NDUFB4O95168 129 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 KIR3DS1Q14943 382 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 RGS21Q2M5E4 152 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 EXOC3-AS1Q8N2X6 119 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 FAM167A-AS1Q96KT0 104 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 C20orf144Q9BQM9 153 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 PAXXQ9BUH6 204 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 AAMDCQ9H7C9 122 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 WFDC1Q9HC57 220 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms