RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 Q9H3A6 140 aa7.79□□□□□ -1.16
CLIP3-203ENST00000586457 PLA2G2EQ9NZK7 142 aa7.79□□□□□ -1.16
CLIP3-203ENST00000586457 RPH3ALQ9UNE2 315 aa7.79□□□□□ -1.16
CLIP3-203ENST00000586457 IGKV2-40A0A087WW87 121 aaPredicted RBP7.78□□□□□ -1.16
CLIP3-203ENST00000586457 PGPA6NDG6 321 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 CBY3A6NI87 242 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 TAAR5O14804 337 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 RGS13O14921 159 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 HMGB3O15347 200 aaKnown RBP7.78□□□□□ -1.16
CLIP3-203ENST00000586457 IGKV2D-40P01614 121 aaPredicted RBP7.78□□□□□ -1.16
CLIP3-203ENST00000586457 PRM2P04554 102 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 AZU1P20160 251 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 ATP6V0CP27449 155 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 CDC34P49427 236 aaPredicted RBP7.78□□□□□ -1.16
CLIP3-203ENST00000586457 ZNF138P52744 262 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 RAB2AP61019 212 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 C9orf47Q6ZRZ4 202 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 UBE2DNLQ8IWF7 75 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 TMEM263Q8WUH6 116 aaKnown RBP7.78□□□□□ -1.16
CLIP3-203ENST00000586457 PHYHIPLQ96FC7 376 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 FAM210BQ96KR6 192 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 PYGO2Q9BRQ0 406 aa7.78□□□□□ -1.16
CLIP3-203ENST00000586457 CSMD3Q7Z407 3707 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 C7orf71A4D174 169 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 F5H768 121 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 K7EQM0 130 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 ARPC5O15511 151 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 NMBP08949 121 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 P0DMU3 169 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 FAM231AP0DMU4 169 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 FAM231CP0DMU5 169 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 Q5BKY6 102 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 OR2G3Q8NGZ4 309 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 NOP10Q9NPE3 64 aaKnown RBP7.77□□□□□ -1.17
CLIP3-203ENST00000586457 OTORQ9NRC9 128 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 APLNQ9ULZ1 77 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 TNFSF18Q9UNG2 199 aa7.77□□□□□ -1.17
CLIP3-203ENST00000586457 RBAKDNA6NC62 111 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 CXorf1O96002 111 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 ATP5G1P05496 136 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 ATP5G3P48201 142 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 KIR3DS1Q14943 382 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 AKR1C8PQ5T2L2 129 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 RPL7L1Q6DKI1 246 aaKnown RBP7.76□□□□□ -1.17
CLIP3-203ENST00000586457 ZNF680Q8NEM1 530 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 RAB24Q969Q5 203 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 VGLL1Q99990 258 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 ARPC5LQ9BPX5 153 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 ZNF492Q9P255 531 aa7.76□□□□□ -1.17
CLIP3-203ENST00000586457 DIRC3C9JPN6 131 aa7.75□□□□□ -1.17
CLIP3-203ENST00000586457 EIF3GO75821 320 aaKnown RBP eCLIP7.75□□□□□ -1.17
CLIP3-203ENST00000586457 ARL14EPLP0DKL9 152 aa7.75□□□□□ -1.17
CLIP3-203ENST00000586457 EIF4E3Q8N5X7 224 aaKnown RBP7.75□□□□□ -1.17
CLIP3-203ENST00000586457 NDFIP1Q9BT67 221 aa7.75□□□□□ -1.17
CLIP3-203ENST00000586457 TMEM167BQ9NRX6 74 aa7.75□□□□□ -1.17
CLIP3-203ENST00000586457 KMT2CQ8NEZ4 4911 aaKnown RBP7.74□□□□□ -1.17
CLIP3-203ENST00000586457 TRGV2A0A075B6R0 118 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 TRBV7-9A0A0J9YWB2 115 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 GAGE12BA1L429 117 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 GAGE7O76087 117 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 GAGE12FP0CL80 117 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 GAGE12GP0CL81 117 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 GAGE12IP0CL82 117 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 STAG3L2P0CL84 134 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 STAG3L3P0CL85 134 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 CD300CQ08708 224 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 BTN1A1Q13410 526 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 OR5I1Q13606 314 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 FAM159AQ6UWV7 190 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 RNASE8Q8TDE3 154 aaKnown RBP7.74□□□□□ -1.17
CLIP3-203ENST00000586457 ZNF503Q96F45 646 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 ATG101Q9BSB4 218 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 SH3BGRL3Q9H299 93 aa7.74□□□□□ -1.17
CLIP3-203ENST00000586457 KANTRA0A1W2PQU2 76 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 RNF222A6NCQ9 220 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 KLLNB2CW77 178 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 PFDN1O60925 122 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 NUDT3O95989 172 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 IFNA7P01567 189 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 CRISP2P16562 243 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 GCHFRP30047 84 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 TMEM88Q6PEY1 159 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 GOLT1AQ6ZVE7 132 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 ARL6IP6Q8N6S5 226 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 C15orf53Q8NAA6 179 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 Q8TAT8 98 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 STOML3Q8TAV4 291 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 ST6GAL2Q96JF0 529 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 LENEPQ9Y5L5 61 aa7.73□□□□□ -1.17
CLIP3-203ENST00000586457 IGHV1OR15-1A0A075B7D0 117 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 A0A0D9SG52 128 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 SERTM2A0A1B0GWG4 89 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 SMLR1H3BR10 107 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 SUMO1P63165 101 aaKnown RBP7.72□□□□□ -1.17
CLIP3-203ENST00000586457 EIF5AP63241 154 aaKnown RBP7.72□□□□□ -1.17
CLIP3-203ENST00000586457 ZFP69Q49AA0 526 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 POM121L12Q8N7R1 296 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 TMED6Q8WW62 240 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 FAM19A4Q96LR4 140 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 TREM1Q9NP99 234 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms