RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ARL14EPLP0DKL9 152 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 TAS2R60P59551 318 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 DAD1P61803 113 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 SERF2P84101 59 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 FAM74A1Q5RGS3 127 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 LINC00476Q8WZB0 136 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 LINC00477Q96M19 166 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 AGPAT4-IT1Q9H0P7 198 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 ALMS1Q8TCU4 4167 aa13.95□□□□□ -0.18
SS18-209ENST00000578595 AZU1P20160 251 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 CCDC28AQ8IWP9 274 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 LYPD1Q8N2G4 141 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 Q8TAT8 98 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 C16orf74Q96GX8 76 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 VGLL1Q99990 258 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 C20orf144Q9BQM9 153 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 ACTR3CQ9C0K3 210 aaPredicted RBP13.94□□□□□ -0.18
SS18-209ENST00000578595 PLA2G2EQ9NZK7 142 aa13.94□□□□□ -0.18
SS18-209ENST00000578595 C7orf71A4D174 169 aa13.93□□□□□ -0.18
SS18-209ENST00000578595 TAAR5O14804 337 aa13.93□□□□□ -0.18
SS18-209ENST00000578595 GPX1P07203 203 aa13.93□□□□□ -0.18
SS18-209ENST00000578595 RAB24Q969Q5 203 aa13.93□□□□□ -0.18
SS18-209ENST00000578595 PGPA6NDG6 321 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 SLC25A5P05141 298 aaKnown RBP13.92□□□□□ -0.18
SS18-209ENST00000578595 DEFB130BP0DP73 79 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 DEFB130AP0DP74 79 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 RNASE4P34096 147 aaKnown RBP13.92□□□□□ -0.18
SS18-209ENST00000578595 BTN1A1Q13410 526 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 AKR1C8PQ5T2L2 129 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 C9orf47Q6ZRZ4 202 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 RXFP4Q8TDU9 374 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 OTORQ9NRC9 128 aa13.92□□□□□ -0.18
SS18-209ENST00000578595 IGHV4-4A0A075B6R2 117 aa13.91□□□□□ -0.18
SS18-209ENST00000578595 STAG3L2P0CL84 134 aa13.91□□□□□ -0.18
SS18-209ENST00000578595 STAG3L3P0CL85 134 aa13.91□□□□□ -0.18
SS18-209ENST00000578595 TMEM263Q8WUH6 116 aaKnown RBP13.91□□□□□ -0.18
SS18-209ENST00000578595 ARPC5LQ9BPX5 153 aa13.91□□□□□ -0.18
SS18-209ENST00000578595 LYRM9A8MSI8 78 aa13.9□□□□□ -0.18
SS18-209ENST00000578595 ZNF138P52744 262 aa13.9□□□□□ -0.18
SS18-209ENST00000578595 CXorf1O96002 111 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 GCHFRP30047 84 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 CD300CQ08708 224 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 ZNF493Q6ZR52 646 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 LYSTQ99698 3801 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 PYGO2Q9BRQ0 406 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 ZNF492Q9P255 531 aa13.89□□□□□ -0.19
SS18-209ENST00000578595 TIMM8BQ9Y5J9 83 aaPredicted RBP13.89□□□□□ -0.19
SS18-209ENST00000578595 RBAKDNA6NC62 111 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 SNURFLB1AK76 121 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 DIRC3C9JPN6 131 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 TCTAP57738 103 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 GNG5P63218 68 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 GOLT1AQ6ZVE7 132 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 NOP10Q9NPE3 64 aaKnown RBP13.88□□□□□ -0.19
SS18-209ENST00000578595 TMEM167BQ9NRX6 74 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 SACSQ9NZJ4 4579 aa13.88□□□□□ -0.19
SS18-209ENST00000578595 RYR3Q15413 4870 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 CTXND1A0A1B0GTU2 59 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 KANTRA0A1W2PQU2 76 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 CBY3A6NI87 242 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 KLLNB2CW77 178 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 RGS13O14921 159 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 PFDN1O60925 122 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 ZNF345Q14585 488 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 SSX7Q7RTT5 188 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 KCNRGQ8N5I3 272 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 OR11H4Q8NGC9 324 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 RNASE8Q8TDE3 154 aaKnown RBP13.87□□□□□ -0.19
SS18-209ENST00000578595 NDUFAF3Q9BU61 184 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 ZNF471Q9BX82 626 aaPredicted RBP13.87□□□□□ -0.19
SS18-209ENST00000578595 APLNQ9ULZ1 77 aa13.87□□□□□ -0.19
SS18-209ENST00000578595 PLECQ15149 4684 aaKnown RBP13.87□□□□□ -0.19
SS18-209ENST00000578595 CRISP2P16562 243 aa13.86□□□□□ -0.19
SS18-209ENST00000578595 PRR9Q5T870 116 aa13.86□□□□□ -0.19
SS18-209ENST00000578595 ZFAND2AQ8N6M9 145 aa13.86□□□□□ -0.19
SS18-209ENST00000578595 FAM19A4Q96LR4 140 aa13.86□□□□□ -0.19
SS18-209ENST00000578595 CYTL1Q9NRR1 136 aa13.86□□□□□ -0.19
SS18-209ENST00000578595 hCG_2014768A0A024R1R8 64 aa13.85□□□□□ -0.19
SS18-209ENST00000578595 A0A0D9SG52 128 aa13.85□□□□□ -0.19
SS18-209ENST00000578595 PLAC8L1A1L4L8 177 aa13.85□□□□□ -0.19
SS18-209ENST00000578595 HMSDA8MTL9 139 aa13.85□□□□□ -0.19
SS18-209ENST00000578595 BCL2L11O43521 198 aa13.84□□□□□ -0.19
SS18-209ENST00000578595 NMBP08949 121 aa13.84□□□□□ -0.19
SS18-209ENST00000578595 FGF8P55075 233 aaPredicted RBP13.84□□□□□ -0.19
SS18-209ENST00000578595 LGALS9CQ6DKI2 356 aa13.84□□□□□ -0.19
SS18-209ENST00000578595 EIF4E3Q8N5X7 224 aaKnown RBP13.84□□□□□ -0.19
SS18-209ENST00000578595 DNAH1Q9P2D7 4330 aa13.84□□□□□ -0.19
SS18-209ENST00000578595 RYR2Q92736 4967 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 TRAV8-1A0A0A6YYK1 113 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 F5H768 121 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 K7EQM0 130 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 UBE2G2P60604 165 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 ZNF726P1Q15940 193 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 C5orf17Q8NAS9 161 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 ZNF680Q8NEM1 530 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 ST6GAL2Q96JF0 529 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 SGK494Q96LW2 274 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 NDFIP1Q9BT67 221 aa13.83□□□□□ -0.2
SS18-209ENST00000578595 GAGE12BA1L429 117 aa13.82□□□□□ -0.2
SS18-209ENST00000578595 MAP1LC3B2A6NCE7 125 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms