RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TMEM75Q8N9X5 138 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 DCANP1Q8TF63 244 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SMIM12Q96EX1 92 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 LINC00052Q96N35 136 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SMIM7Q9BQ49 75 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 NIPSNAP3BQ9BS92 247 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 NDFIP1Q9BT67 221 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SEC11CQ9BY50 192 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 BIN3Q9NQY0 253 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 RPH3ALQ9UNE2 315 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 TRAV8-2A0A0B4J237 113 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 TRBV6-1A0A0K0K1D8 114 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 OR11H12B2RN74 326 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 F8W036 122 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 M0R3E3 92 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 ZNF688P0C7X2 276 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 S100A1P23297 94 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 PNRC1Q12796 327 aaPredicted RBP4.8□□□□□ -1.64
VPS53-209ENST00000570771 TMEM183BQ1AE95 376 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 ZNF674Q2M3X9 581 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 BEAN1Q3B7T3 259 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 PSMG4Q5JS54 123 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 SAPCD1Q5SSQ6 148 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 TMEM78Q5T7P6 136 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 GTSCR1Q86UQ5 136 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 FAM24BQ8N5W8 94 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 RNF182Q8N6D2 247 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 C2CD4CQ8TF44 421 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 LINC00477Q96M19 166 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 FAM110AQ9BQ89 295 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 SSBP4Q9BWG4 385 aaPredicted RBP4.8□□□□□ -1.64
VPS53-209ENST00000570771 WFDC10AQ9H1F0 79 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 PARLQ9H300 379 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 PPP1R14DQ9NXH3 145 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 ZFP30Q9Y2G7 519 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 KLF12Q9Y4X4 402 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 LY96Q9Y6Y9 160 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 SORL1Q92673 2214 aa4.8□□□□□ -1.64
VPS53-209ENST00000570771 TRBV7-9A0A0J9YWB2 115 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 C9JCJ5 164 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 RPL35P42766 123 aaKnown RBP4.79□□□□□ -1.64
VPS53-209ENST00000570771 GNG4P50150 75 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 DEFB131AP59861 70 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 DEFB1P60022 68 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 GNG5P63218 68 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 SRSF3P84103 164 aaKnown RBP4.79□□□□□ -1.64
VPS53-209ENST00000570771 FLI1Q01543 452 aaPredicted RBP4.79□□□□□ -1.64
VPS53-209ENST00000570771 TMEM241Q24JQ0 296 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 IGFL4Q6B9Z1 124 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 FOXI2Q6ZQN5 318 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 C9orf47Q6ZRZ4 202 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 BAGE2Q86Y30 109 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 OR8A1Q8NGG7 326 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 NAT8Q9UHE5 227 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 ZNF256Q9Y2P7 627 aaPredicted RBP4.79□□□□□ -1.64
VPS53-209ENST00000570771 LENEPQ9Y5L5 61 aa4.79□□□□□ -1.64
VPS53-209ENST00000570771 TENM3Q9P273 2699 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 IGKV2-40A0A087WW87 121 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 ZNF705FA8MVS1 300 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 C9JQL5 133 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 NPIPB6E9PJ23 425 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 SNAPINO95295 136 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 IGKV2D-40P01614 121 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 CT45A10P0DMU9 189 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 HLA-DMBP28068 263 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 TSPOP30536 169 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 ZNF138P52744 262 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 HIST1H1AQ02539 215 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 ZNF124Q15973 351 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 CENPWQ5EE01 88 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 KPRPQ5T749 579 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 PRNTQ86SH4 94 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 Q86TA4 180 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 SVBPQ8N300 66 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 TVP23CQ96ET8 276 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 C20orf173Q96LM9 149 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 ODF3Q96PU9 254 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 PRR25Q96S07 402 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 SAV1Q9H4B6 383 aaPredicted RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 MAP6D1Q9H9H5 199 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 PSG8Q9UQ74 426 aa4.78□□□□□ -1.64
VPS53-209ENST00000570771 CARHSP1Q9Y2V2 147 aaKnown RBP4.78□□□□□ -1.64
VPS53-209ENST00000570771 TRAV34A0A0B4J273 112 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 A0A0J9YX75 114 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 B4DEV8 164 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 ATP6V1G1O75348 118 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 LTAP01374 205 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 AMBPP02760 352 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 HLA-DRB4P13762 266 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 LEPP41159 167 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 NUTF2P61970 127 aaKnown RBP4.77□□□□□ -1.65
VPS53-209ENST00000570771 EGFEM1PQ0D2K5 195 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 SMUG1Q53HV7 270 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 C10orf91Q5T1B1 145 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 STHQ8IWL8 128 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 TMEM183AQ8IXX5 376 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 OR4B1Q8NGF8 309 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 DERL1Q9BUN8 251 aa4.77□□□□□ -1.65
VPS53-209ENST00000570771 SDF2L1Q9HCN8 221 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms