RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 STHQ8IWL8 128 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 IQCF2Q8IXL9 164 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 C1orf158Q8N1D5 194 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 C5orf17Q8NAS9 161 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 OR4B1Q8NGF8 309 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 Q8TAT8 98 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 C2CD4CQ8TF44 421 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 LINC00479Q96M42 142 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 ODF3Q96PU9 254 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 OVOL2Q9BRP0 275 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 CSTL1Q9H114 145 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 AAMDCQ9H7C9 122 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 PPP1R14DQ9NXH3 145 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 EPDR1Q9UM22 224 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 KLLNB2CW77 178 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 DUSP14O95147 198 aaKnown RBP6.74□□□□□ -1.33
VPS35-211ENST00000569950 CRISP2P16562 243 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 SPINK13Q1W4C9 94 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 EBLN2Q6P2I7 272 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 MORN3Q6PF18 240 aaPredicted RBP6.74□□□□□ -1.33
VPS35-211ENST00000569950 ZNF705AQ6ZN79 300 aaPredicted RBP6.74□□□□□ -1.33
VPS35-211ENST00000569950 GOLT1AQ6ZVE7 132 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 Q6ZWC4 215 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 RNF183Q96D59 192 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 ZNF492Q9P255 531 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 KLF12Q9Y4X4 402 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 X6R8D5 127 aa6.74□□□□□ -1.33
VPS35-211ENST00000569950 LOC102723971A0A1B0GUV8 181 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 CA1P00915 261 aaPredicted RBP6.73□□□□□ -1.33
VPS35-211ENST00000569950 HBE1P02100 147 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 BCL2P10415 239 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 BLOC1S1P78537 153 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 DEFB135Q30KP9 77 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 GFI1BQ5VTD9 330 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 RXFP4Q8TDU9 374 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 C11orf52Q96A22 123 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 SGK494Q96LW2 274 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 LINC00477Q96M19 166 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 RARRES2Q99969 163 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 ATG101Q9BSB4 218 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 GNG13Q9P2W3 67 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 XCL2Q9UBD3 114 aa6.73□□□□□ -1.33
VPS35-211ENST00000569950 DYNC2H1Q8NCM8 4307 aaKnown RBP6.73□□□□□ -1.33
VPS35-211ENST00000569950 TRAV12-2A0A075B6T6 113 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TRAV34A0A0B4J273 112 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TRBV7-9A0A0J9YWB2 115 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 SCO2A0A1W2PP80 73 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TEX46H3BTG2 121 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 PEX7O00628 323 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 UBE2CO00762 179 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 ZNF324O75467 553 aaPredicted RBP6.72□□□□□ -1.33
VPS35-211ENST00000569950 IFNA7P01567 189 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 PRM2P04554 102 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 ZNF138P52744 262 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 APOC4P55056 127 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 CYB561D1Q8N8Q1 229 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TMEM75Q8N9X5 138 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 OR10J6PQ8NGY7 276 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 IGF2BP2-AS1Q96M15 143 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 DERL1Q9BUN8 251 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 NKX6-2Q9C056 277 aaPredicted RBP6.72□□□□□ -1.33
VPS35-211ENST00000569950 MANBALQ9NQG1 85 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 RPH3ALQ9UNE2 315 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TP53TG1Q9Y2A0 90 aa6.72□□□□□ -1.33
VPS35-211ENST00000569950 TENM2Q9NT68 2774 aa6.71□□□□□ -1.33
VPS35-211ENST00000569950 TRBV20OR9-2A0A075B6H5 130 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 TRBV6-1A0A0K0K1D8 114 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 C9JQL5 133 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 C11orf94C9JXX5 98 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 RGS13O14921 159 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 CDKN1BP46527 198 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 PPT1P50897 306 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 ZNF80P51504 273 aaPredicted RBP6.71□□□□□ -1.34
VPS35-211ENST00000569950 SRSF3P84103 164 aaKnown RBP6.71□□□□□ -1.34
VPS35-211ENST00000569950 MEF2BQ02080 365 aaPredicted RBP6.71□□□□□ -1.34
VPS35-211ENST00000569950 BTN1A1Q13410 526 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 ZNF506Q5JVG8 444 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 CST9LP1Q5W188 147 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 COX8CQ7Z4L0 72 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 Q86TA4 180 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 ZNF575Q86XF7 245 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 HIST1H2BAQ96A08 127 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 FAM210AQ96ND0 272 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 C8orf49Q96NF6 230 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 PSG8Q9UQ74 426 aa6.71□□□□□ -1.34
VPS35-211ENST00000569950 STARD9Q9P2P6 4700 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 SERTM2A0A1B0GWG4 89 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 PLAC8L1A1L4L8 177 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 RBFOX3A6NFN3 312 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 SPRY2O43597 315 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 IGLV2-8P01709 118 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 CSN1S1P47710 185 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 CRIP1P50238 77 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 FLI1Q01543 452 aaPredicted RBP6.7□□□□□ -1.34
VPS35-211ENST00000569950 ZNF767PQ75MW2 155 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 Q8NAQ8 132 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 CMTM2Q8TAZ6 248 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 SPATA25Q9BR10 227 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 TCEAL7Q9BRU2 100 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 MLST8Q9BVC4 326 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 252.4 ms