RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 AQP10Q96PS8 301 aa13.25□□□□□ -0.29
CLN3-227ENST00000567495 TRAV12-3A0A0B4J271 114 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 TRBV7-9A0A0J9YWB2 115 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 C7orf71A4D174 169 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 KLLNB2CW77 178 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 ATP5G1P05496 136 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 CRISP2P16562 243 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 ATP5G3P48201 142 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 RGS21Q2M5E4 152 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 FAM122CQ6P4D5 195 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 C15orf53Q8NAA6 179 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 FAM19A4Q96LR4 140 aa13.24□□□□□ -0.29
CLN3-227ENST00000567495 A0A1W2PPV4 95 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 RBAKDNA6NC62 111 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 J3KRW8 73 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 RANP62826 216 aaKnown RBP13.23□□□□□ -0.29
CLN3-227ENST00000567495 PQLC2Q6ZP29 291 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 RXFP4Q8TDU9 374 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 PHYHIPLQ96FC7 376 aa13.23□□□□□ -0.29
CLN3-227ENST00000567495 NOP10Q9NPE3 64 aaKnown RBP13.23□□□□□ -0.29
CLN3-227ENST00000567495 KMT2AQ03164 3969 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 SNURFLB1AK76 121 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 TMEM88Q6PEY1 159 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 INO80EQ8NBZ0 244 aaPredicted RBP13.22□□□□□ -0.29
CLN3-227ENST00000567495 ZNF503Q96F45 646 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 LINC00467Q9BRT7 94 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 Q9H3A6 140 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 ZNF492Q9P255 531 aa13.22□□□□□ -0.29
CLN3-227ENST00000567495 IGKV2-40A0A087WW87 121 aaPredicted RBP13.21□□□□□ -0.29
CLN3-227ENST00000567495 IGKV2D-40P01614 121 aaPredicted RBP13.21□□□□□ -0.29
CLN3-227ENST00000567495 GPX1P07203 203 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 ZNF138P52744 262 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 DAZ2Q13117 558 aaKnown RBP13.21□□□□□ -0.29
CLN3-227ENST00000567495 FAM74A1Q5RGS3 127 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 ZNF680Q8NEM1 530 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 OR2G3Q8NGZ4 309 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 VGLL1Q99990 258 aa13.21□□□□□ -0.29
CLN3-227ENST00000567495 F5H768 121 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 ZNF324O75467 553 aaPredicted RBP13.2□□□□□ -0.3
CLN3-227ENST00000567495 MBP02144 154 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 RNASE4P34096 147 aaKnown RBP13.2□□□□□ -0.3
CLN3-227ENST00000567495 RNF212Q495C1 297 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 ARL6IP6Q8N6S5 226 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 LINC00612Q8N6U2 182 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 OR10G4Q8NGN3 311 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 OR10G9Q8NGN4 311 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 OR10G7Q8NGN6 311 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 PSMG3Q9BT73 122 aaPredicted RBP13.2□□□□□ -0.3
CLN3-227ENST00000567495 OTORQ9NRC9 128 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 VPS13DQ5THJ4 4388 aa13.2□□□□□ -0.3
CLN3-227ENST00000567495 SERF2P84101 59 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 CD300CQ08708 224 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 ANXA2RQ3ZCQ2 193 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 UBE2DNLQ8IWF7 75 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 ZFAND2AQ8N6M9 145 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 LENEPQ9Y5L5 61 aa13.19□□□□□ -0.3
CLN3-227ENST00000567495 FAM3BP58499 235 aaPredicted RBP13.18□□□□□ -0.3
CLN3-227ENST00000567495 RAB2AP61019 212 aa13.18□□□□□ -0.3
CLN3-227ENST00000567495 EIF4E3Q8N5X7 224 aaKnown RBP13.18□□□□□ -0.3
CLN3-227ENST00000567495 HSD17B11Q8NBQ5 300 aa13.18□□□□□ -0.3
CLN3-227ENST00000567495 CMTM2Q8TAZ6 248 aa13.18□□□□□ -0.3
CLN3-227ENST00000567495 EPPK1P58107 5090 aaKnown RBP13.18□□□□□ -0.3
CLN3-227ENST00000567495 BTN1A1Q13410 526 aa13.17□□□□□ -0.3
CLN3-227ENST00000567495 Q5BKY6 102 aa13.17□□□□□ -0.3
CLN3-227ENST00000567495 OR2T35Q8NGX2 323 aa13.17□□□□□ -0.3
CLN3-227ENST00000567495 TMED6Q8WW62 240 aa13.17□□□□□ -0.3
CLN3-227ENST00000567495 GNPNAT1Q96EK6 184 aaPredicted RBP13.17□□□□□ -0.3
CLN3-227ENST00000567495 BORCS7-ASMTA0A0B4J1R7 106 aa13.16□□□□□ -0.3
CLN3-227ENST00000567495 DIRC3C9JPN6 131 aa13.16□□□□□ -0.3
CLN3-227ENST00000567495 RGS13O14921 159 aa13.16□□□□□ -0.3
CLN3-227ENST00000567495 ATP6V0CP27449 155 aa13.16□□□□□ -0.3
CLN3-227ENST00000567495 CDC34P49427 236 aaPredicted RBP13.16□□□□□ -0.3
CLN3-227ENST00000567495 FXYD6-FXYD2A0A087WZ82 144 aa13.15□□□□□ -0.3
CLN3-227ENST00000567495 PGPA6NDG6 321 aa13.15□□□□□ -0.3
CLN3-227ENST00000567495 IBA57Q5T440 356 aaKnown RBP13.15□□□□□ -0.3
CLN3-227ENST00000567495 HYLS1Q96M11 299 aa13.15□□□□□ -0.3
CLN3-227ENST00000567495 TNFSF18Q9UNG2 199 aa13.15□□□□□ -0.3
CLN3-227ENST00000567495 GAGE12BA1L429 117 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 GAGE7O76087 117 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 GAGE12FP0CL80 117 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 GAGE12GP0CL81 117 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 GAGE12IP0CL82 117 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 C11orf72Q8NBR9 251 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 Q8TAT8 98 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 C18orf15Q96N68 181 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 GSN-AS1Q9NRJ2 163 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 BIRC6Q9NR09 4857 aa13.14□□□□□ -0.31
CLN3-227ENST00000567495 IGHV1OR15-1A0A075B7D0 117 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 RNF222A6NCQ9 220 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 STAG3L2P0CL84 134 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 STAG3L3P0CL85 134 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 ARL14EPLP0DKL9 152 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 TCL1AP56279 114 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 LGALS9BQ3B8N2 356 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 RAB24Q969Q5 203 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 ATG101Q9BSB4 218 aa13.13□□□□□ -0.31
CLN3-227ENST00000567495 SERTM2A0A1B0GWG4 89 aa13.12□□□□□ -0.31
CLN3-227ENST00000567495 EIF3GO75821 320 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLN3-227ENST00000567495 OR5I1Q13606 314 aa13.12□□□□□ -0.31
CLN3-227ENST00000567495 PRR9Q5T870 116 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms