RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MRPL53Q96EL3 112 aaKnown RBP10.42□□□□□ -0.74
LDLR-213ENST00000560502 FMC1Q96HJ9 113 aa10.42□□□□□ -0.74
LDLR-213ENST00000560502 SMCO4Q9NRQ5 59 aa10.42□□□□□ -0.74
LDLR-213ENST00000560502 KLF12Q9Y4X4 402 aa10.42□□□□□ -0.74
LDLR-213ENST00000560502 IGHV7-4-1A0A0J9YVY3 117 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 CXorf65A6NEN9 183 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 OR11H12B2RN74 326 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 TSPAN4O14817 238 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 PPP1R2P9O14990 202 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 MT-ND4LP03901 98 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 TCRAP04437 139 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 FOLR2P14207 255 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 CSN1S1P47710 185 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 GNG4P50150 75 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 RPL23P62829 140 aaKnown RBP10.41□□□□□ -0.74
LDLR-213ENST00000560502 TMEM183BQ1AE95 376 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 LINC01551Q86U37 167 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 DYNLRB2Q8TF09 96 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 RPS10P5Q9NQ39 176 aa10.41□□□□□ -0.74
LDLR-213ENST00000560502 ZNF320A2RRD8 509 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 UBE2G1P62253 170 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 ADIRFQ15847 76 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 ANAPC16Q96DE5 110 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 DERL1Q9BUN8 251 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 ZNF331Q9NQX6 463 aaPredicted RBP10.4□□□□□ -0.74
LDLR-213ENST00000560502 BIN3Q9NQY0 253 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 SMPXQ9UHP9 88 aa10.4□□□□□ -0.74
LDLR-213ENST00000560502 TRBV20OR9-2A0A075B6H5 130 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 IGHV3OR16-8A0A075B7F1 116 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 SCO1O75880 301 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 CENPWQ5EE01 88 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 TMEM75Q8N9X5 138 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 LINC00476Q8WZB0 136 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 IGF2BP2-AS1Q96M15 143 aa10.39□□□□□ -0.75
LDLR-213ENST00000560502 TMEM213A2RRL7 107 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 DNASE2O00115 360 aaPredicted RBP10.38□□□□□ -0.75
LDLR-213ENST00000560502 SLC17A3O00476 420 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 CHEK1O14757 476 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 ZNF207O43670 478 aaKnown RBP10.38□□□□□ -0.75
LDLR-213ENST00000560502 BTN1A1Q13410 526 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 TMEM61Q8N0U2 210 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 ISOC2Q96AB3 205 aa10.38□□□□□ -0.75
LDLR-213ENST00000560502 RBAKDNA6NC62 111 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 H3BTX0 84 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 APOHP02749 345 aaPredicted RBP10.37□□□□□ -0.75
LDLR-213ENST00000560502 CBLN1P23435 193 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 EXOC3-AS1Q8N2X6 119 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 C15orf54Q8N8G6 183 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 C17orf77Q96MU5 243 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 OVOL2Q9BRP0 275 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 RHPN1-AS1Q9BWJ2 59 aa10.37□□□□□ -0.75
LDLR-213ENST00000560502 DIRC3C9JPN6 131 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 LTAP01374 205 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 GNG5P63218 68 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 RNF212Q495C1 297 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 OCC1Q8TAD7 63 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 NRN1Q9NPD7 142 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 MLXQ9UH92 298 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 ZFP30Q9Y2G7 519 aa10.36□□□□□ -0.75
LDLR-213ENST00000560502 H7BYZ3 331 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 ISLRO14498 428 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 GCGP01275 180 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 SNRPCP09234 159 aaKnown RBP10.35□□□□□ -0.75
LDLR-213ENST00000560502 PSG3Q16557 428 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 TM4SF20Q53R12 229 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 GOLT1AQ6ZVE7 132 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 Q86TA4 180 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 BAGE2Q86Y30 109 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 CBLN2Q8IUK8 224 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 SFRP2Q96HF1 295 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 BTF3L4Q96K17 158 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 IMMP2LQ96T52 175 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 SELENOKQ9Y6D0 94 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 FRAS1Q86XX4 4008 aa10.35□□□□□ -0.75
LDLR-213ENST00000560502 IGHV3-49A0A0A0MS15 119 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 IGHV3-66A0A0C4DH42 116 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 FLI1Q01543 452 aaPredicted RBP10.34□□□□□ -0.75
LDLR-213ENST00000560502 TMEM88Q6PEY1 159 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 FAM231DQ6ZW35 169 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 WFDC3Q8IUB2 231 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 OSTCQ9NRP0 149 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 RPH3ALQ9UNE2 315 aa10.34□□□□□ -0.75
LDLR-213ENST00000560502 IGHV3OR16-13A0A075B7E8 117 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 LOC102724200A0A096LPH7 203 aaPredicted RBP10.33□□□□□ -0.76
LDLR-213ENST00000560502 IGHV3-74A0A0B4J1X5 117 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 SOCS3O14543 225 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 IGLV2-8P01709 118 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 S100PP25815 95 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 SAPCD1Q5SSQ6 148 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 TCF24Q7RTU0 167 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 TMEM183AQ8IXX5 376 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 OR10G8Q8NGN5 311 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 C16orf92Q96LL3 132 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 MLST8Q9BVC4 326 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 KRTAP17-1Q9BYP8 105 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 ZNF492Q9P255 531 aa10.33□□□□□ -0.76
LDLR-213ENST00000560502 TRAV2A0A0B4J234 112 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 TRAV25A0A0B4J276 109 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 K7EN84 100 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms