RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SNRPCP09234 159 aaKnown RBP6.82□□□□□ -1.32
LDLR-211ENST00000560173 ADCYAP1P18509 176 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 HLA-DMBP28068 263 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 GCHFRP30047 84 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 EBLN2Q6P2I7 272 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 ZNF738Q8NE65 137 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 FAM167A-AS1Q96KT0 104 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 RARRES2Q99969 163 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 TCEAL7Q9BRU2 100 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 SLC50A1Q9BRV3 221 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 ZNF331Q9NQX6 463 aaPredicted RBP6.82□□□□□ -1.32
LDLR-211ENST00000560173 TMEM14CQ9P0S9 112 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 C9JQL5 133 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 C11orf94C9JXX5 98 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 H3BTX0 84 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 M0R036 132 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 IGKV3-20P01619 116 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 ARL14EPLP0DKL9 152 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 NUTF2P61970 127 aaKnown RBP6.81□□□□□ -1.32
LDLR-211ENST00000560173 PSG3Q16557 428 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 MIR17HGQ75NE6 70 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 SSX7Q7RTT5 188 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 CYB561D1Q8N8Q1 229 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 CSNK1G2-AS1Q8NCQ2 148 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 OR4B1Q8NGF8 309 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 OR11H2Q8NH07 326 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 RPUSD4Q96CM3 377 aaKnown RBP6.81□□□□□ -1.32
LDLR-211ENST00000560173 TVP23CQ96ET8 276 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 SLC25A2Q9BXI2 301 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 SMCO4Q9NRQ5 59 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 ZNF586Q9NXT0 402 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 CLEC5AQ9NY25 188 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 XCL2Q9UBD3 114 aa6.81□□□□□ -1.32
LDLR-211ENST00000560173 A0A087WWC5 75 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 A0A0J9YWU9 116 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 A0A1W2PRE2 83 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 HMGB3O15347 200 aaKnown RBP6.8□□□□□ -1.32
LDLR-211ENST00000560173 OR7C2O60412 319 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 PAGE4O60829 102 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 ZNF253O75346 499 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 DUSP14O95147 198 aaKnown RBP6.8□□□□□ -1.32
LDLR-211ENST00000560173 PYYP10082 97 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 HIST1H1EP10412 219 aaKnown RBP6.8□□□□□ -1.32
LDLR-211ENST00000560173 CNN1P51911 297 aaKnown RBP6.8□□□□□ -1.32
LDLR-211ENST00000560173 PSG9Q00887 426 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 BTN1A1Q13410 526 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 CST9LP1Q5W188 147 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 AMTNQ6UX39 209 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 OR8A1Q8NGG7 326 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 C1QTNF4Q9BXJ3 329 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 NAT8Q9UHE5 227 aa6.8□□□□□ -1.32
LDLR-211ENST00000560173 TRBV19A0A075B6N1 114 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 CXorf65A6NEN9 183 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 ZNF727A8MUV8 499 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 NDUFB4O95168 129 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 ZNF705DP0CH99 300 aaPredicted RBP6.79□□□□□ -1.32
LDLR-211ENST00000560173 ZNF705BP0CI00 300 aaPredicted RBP6.79□□□□□ -1.32
LDLR-211ENST00000560173 CEBPGP53567 150 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 FXYD7P58549 80 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 HIST1H1AQ02539 215 aaPredicted RBP6.79□□□□□ -1.32
LDLR-211ENST00000560173 PDE6HQ13956 83 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 TMEM241Q24JQ0 296 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 CASC10Q5T4H9 136 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 Q8NAQ8 132 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 SMIM7Q9BQ49 75 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 C11orf68Q9H3H3 251 aaKnown RBP6.79□□□□□ -1.32
LDLR-211ENST00000560173 X6R8D5 127 aa6.79□□□□□ -1.32
LDLR-211ENST00000560173 C7orf77A4D0Y5 90 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 ZNF705FA8MVS1 300 aaPredicted RBP6.78□□□□□ -1.32
LDLR-211ENST00000560173 PRAC2D3DTV9 90 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 PRB4P10163 310 aaPredicted RBP6.78□□□□□ -1.32
LDLR-211ENST00000560173 MIFP14174 115 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 ZFAND6Q6FIF0 208 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 ZNF705AQ6ZN79 300 aaPredicted RBP6.78□□□□□ -1.32
LDLR-211ENST00000560173 SVIPQ8NHG7 77 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 IL17DQ8TAD2 202 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 FXYD5Q96DB9 178 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 ZNF503Q96F45 646 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 PAXXQ9BUH6 204 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 CTDSP1Q9GZU7 261 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 OR51M1Q9H341 326 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 TMPRSS5Q9H3S3 457 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 RPS10P5Q9NQ39 176 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 TMEM242Q9NWH2 141 aa6.78□□□□□ -1.32
LDLR-211ENST00000560173 IGHV4-28A0A0C4DH34 117 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 FAM74A7A6NL05 159 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 SCO1O75880 301 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 AMBPP02760 352 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 MT-ND4LP03901 98 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 OR10J4P0C629 311 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 UBE2L3P68036 154 aaKnown RBP6.77□□□□□ -1.33
LDLR-211ENST00000560173 ATRAIDQ6UW56 229 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 C15orf54Q8N8G6 183 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 BLNKQ8WV28 456 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 C11orf52Q96A22 123 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 MRPL53Q96EL3 112 aaKnown RBP6.77□□□□□ -1.33
LDLR-211ENST00000560173 SDF2L1Q9HCN8 221 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 LY96Q9Y6Y9 160 aa6.77□□□□□ -1.33
LDLR-211ENST00000560173 PLECQ15149 4684 aaKnown RBP6.77□□□□□ -1.33
LDLR-211ENST00000560173 M0R2Z0 102 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms