RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 STAG3L2P0CL84 134 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 STAG3L3P0CL85 134 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 OR10J1P30954 320 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 CEBPGP53567 150 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 EMP1P54849 157 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 ICAM4Q14773 271 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 RNF212Q495C1 297 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 PSMG4Q5JS54 123 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 FAM78BQ5VT40 261 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 C10orf113Q5VZT2 155 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 MIC13Q5XKP0 118 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 CLRN3Q8NCR9 226 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM170AQ8WVE7 144 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 TCEAL7Q9BRU2 100 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 SCRT2Q9NQ03 307 aa5.8□□□□□ -1.48
CCDC88C-214ENST00000557507 A0A1W2PS18 150 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 HELTA6NFD8 242 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF705FA8MVS1 300 aaPredicted RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 HYPMO75409 117 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 OR5G3P0C626 314 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 LINC00869P0C866 280 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF705DP0CH99 300 aaPredicted RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF705BP0CI00 300 aaPredicted RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 SPART-AS1P0CW21 52 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 HTN3P15516 51 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 NPPCP23582 126 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 CRYBB3P26998 211 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 RND2P52198 227 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 FGF8P55075 233 aaPredicted RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 CCL20P78556 96 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 SRSF3P84103 164 aaKnown RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 BTN1A1Q13410 526 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 CST9LP1Q5W188 147 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM88Q6PEY1 159 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF705AQ6ZN79 300 aaPredicted RBP5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 OR4X1Q8NH49 305 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 NPIPB3Q92617 1050 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 BTF3L4Q96K17 158 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 FAM210BQ96KR6 192 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 METTL26Q96S19 204 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 RPS10P5Q9NQ39 176 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 DKK2Q9UBU2 259 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 NAT8Q9UHE5 227 aa5.79□□□□□ -1.48
CCDC88C-214ENST00000557507 A0A087WWC5 75 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF727A8MUV8 499 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 H3BMM0 161 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 H3BQ15 152 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 OR7C2O60412 319 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 MT-ND4LP03901 98 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 GCHFRP30047 84 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF726P1Q15940 193 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM241Q24JQ0 296 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 FAM222AQ5U5X8 452 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 C15orf54Q8N8G6 183 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 CYB561D1Q8N8Q1 229 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 Q8WTZ3 238 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 GLMPQ8WWB7 406 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 NEU1Q99519 415 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 SMIM7Q9BQ49 75 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 C1QTNF4Q9BXJ3 329 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 CTDSP1Q9GZU7 261 aa5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 FNDC4Q9H6D8 234 aaPredicted RBP5.78□□□□□ -1.48
CCDC88C-214ENST00000557507 IGHV3OR16-12A0A075B7B8 117 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 A0A1W2PRE2 83 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 PPP1R2P9O14990 202 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 PAGE4O60829 102 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 IGKV1-17P01599 117 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 RD3LP0DJH9 198 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 ARL14EPLP0DKL9 152 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 HLA-DRB4P13762 266 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 ADCYAP1P18509 176 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 S100PP25815 95 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 FXYD7P58549 80 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 DEFB1P60022 68 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 PLP1P60201 277 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 YPEL3P61236 119 aaPredicted RBP5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 RPL19P84098 196 aaKnown RBP5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 TIGITQ495A1 244 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 GDF5OSQ5U4N7 250 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 C6orf223Q8N319 242 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 OR51G1Q8NGK1 321 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 TMEM242Q9NWH2 141 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 HIGD1AQ9Y241 93 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 RFNGQ9Y644 331 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 U3KQE9 123 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 HLA-DRB4X5D2U9 266 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 MYCBP2O75592 4640 aa5.77□□□□□ -1.49
CCDC88C-214ENST00000557507 FAT1Q14517 4588 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 NBDYA0A0U1RRE5 68 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 C7orf77A4D0Y5 90 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 TMEM189A5PLL7 270 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 S100A9P06702 114 aaKnown RBP5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 ORM2P19652 201 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 NUTF2P61970 127 aaKnown RBP5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 UBE2L3P68036 154 aaKnown RBP5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 MLANAQ16655 118 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 ZNF674Q2M3X9 581 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 C16orf54Q6UWD8 224 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 SPATA12Q7Z6I5 190 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms