RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 HLA-DQA1P01909 254 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 HLA-DRB1P01911 266 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 C15orf32Q32M92 178 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 GCN1Q92616 2671 aaKnown RBP9.11□□□□□ -0.95
SHMT2-212ENST00000554467 RNF125Q96EQ8 232 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 ARL2-SNX15V9GYD0 113 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 TRAV8-1A0A0A6YYK1 113 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 GPR183P32249 361 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 MFAP4P55083 255 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 ST20Q9HBF5 79 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 NDUFS8O00217 210 aa9.11□□□□□ -0.95
SHMT2-212ENST00000554467 HECTD1Q9ULT8 2610 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 IGHV3OR16-13A0A075B7E8 117 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 IGHV3-74A0A0B4J1X5 117 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 H3BUX3 64 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 NEGR1Q7Z3B1 354 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 C5orf56Q8N8D9 126 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 IGF2BP2-AS1Q96M15 143 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 NAA38Q9BRA0 125 aaKnown RBP9.1□□□□□ -0.95
SHMT2-212ENST00000554467 TPPP3Q9BW30 176 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 Q9H3A6 140 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 C7orf71A4D174 169 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 HIGD1CA8MV81 97 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 SLC25A34Q6PIV7 304 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 Q6ZS46 218 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 C2orf91Q6ZV80 131 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 TMEM70Q9BUB7 260 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 NOTCH2Q04721 2471 aa9.1□□□□□ -0.95
SHMT2-212ENST00000554467 IGHV3-66A0A0C4DH42 116 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 GAGE10A6NGK3 116 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 RNF223E7ERA6 249 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 KLF5Q13887 457 aaPredicted RBP9.09□□□□□ -0.95
SHMT2-212ENST00000554467 OSTCQ9NRP0 149 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 PEF1Q9UBV8 284 aaKnown RBP9.09□□□□□ -0.95
SHMT2-212ENST00000554467 SNAI2O43623 268 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 CTSGP08311 255 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 PLP1P60201 277 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 EPDR1Q9UM22 224 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 IGHV3-49A0A0A0MS15 119 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 CLEC3BP05452 202 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 C12orf54Q6X4T0 127 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 LCNL1Q6ZST4 164 aa9.09□□□□□ -0.95
SHMT2-212ENST00000554467 KMT2BQ9UMN6 2715 aaPredicted RBP9.09□□□□□ -0.96
SHMT2-212ENST00000554467 IZUMO1RA6ND01 250 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 SYS1-DBNDD2H3BUS1 97 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 SAMD13Q5VXD3 122 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 IGFL4Q6B9Z1 124 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 CLEC19AQ6UXS0 136 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 STXBP6Q8NFX7 210 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 PGLYRP4Q96LB8 373 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 THYN1Q9P016 225 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 ZNF207O43670 478 aaKnown RBP9.08□□□□□ -0.96
SHMT2-212ENST00000554467 MYCNOSP40205 109 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 BLCAPP62952 87 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 NUP35Q8NFH5 326 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 SHANK2-AS3Q9BTD1 123 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 MTORP42345 2549 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 B4DSR2 109 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 TGFAP01135 160 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 SMPXQ9UHP9 88 aa9.08□□□□□ -0.96
SHMT2-212ENST00000554467 M0R3E3 92 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 CSN3P07498 182 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 DAZAP1Q96EP5 407 aaKnown RBP9.07□□□□□ -0.96
SHMT2-212ENST00000554467 MOB4Q9Y3A3 225 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 IGHV1-24A0A0C4DH33 117 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 H3BRN7 92 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 GOLT1AQ6ZVE7 132 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 FAM110DQ8TAY7 271 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-212ENST00000554467 PMCHL2Q9BQD1 86 aa9.07□□□□□ -0.96
SHMT2-212ENST00000554467 WI2-2373I1.2A0A1W2PRP0 233 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 WIPF2Q8TF74 440 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-212ENST00000554467 CUBNO60494 3623 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 AZU1P20160 251 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 TMEM95Q3KNT9 176 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 COX19Q49B96 90 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 BPIFA4PQ86YQ2 179 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 HIST1H1EP10412 219 aaKnown RBP9.06□□□□□ -0.96
SHMT2-212ENST00000554467 HIST1H1AQ02539 215 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-212ENST00000554467 LINC00322Q6ZN03 302 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-212ENST00000554467 PRNTQ86SH4 94 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 CCDC140Q96MF4 163 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 UNC79Q9P2D8 2635 aa9.06□□□□□ -0.96
SHMT2-212ENST00000554467 TCRAP04437 139 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 MBD6Q96DN6 1003 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 FASNP49327 2511 aaKnown RBP9.05□□□□□ -0.96
SHMT2-212ENST00000554467 ZNF138P52744 262 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 ZNF502Q8TBZ5 544 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 GTSF1LQ9H1H1 148 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 TRBV19A0A075B6N1 114 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 TRAV41A0A0B4J266 112 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 P01737 135 aa9.05□□□□□ -0.96
SHMT2-212ENST00000554467 CIARTQ8N365 385 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-212ENST00000554467 H3BUT2 72 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 IGHV3-11P01762 117 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 C9orf118A6NHY6 69 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 K7EP34 96 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 IGHV4-59P01825 116 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 HLA-DMBP28068 263 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 ZNF414Q96IQ9 312 aa9.04□□□□□ -0.96
SHMT2-212ENST00000554467 NPFFR1Q9GZQ6 430 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms