RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 GNPNAT1Q96EK6 184 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-204ENST00000553324 ZNF503Q96F45 646 aa10.94□□□□□ -0.66
SHMT2-204ENST00000553324 AGPAT4-IT1Q9H0P7 198 aa10.94□□□□□ -0.66
SHMT2-204ENST00000553324 APLNQ9ULZ1 77 aa10.94□□□□□ -0.66
SHMT2-204ENST00000553324 TNFSF18Q9UNG2 199 aa10.94□□□□□ -0.66
SHMT2-204ENST00000553324 TIMM8BQ9Y5J9 83 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-204ENST00000553324 TRBV7-9A0A0J9YWB2 115 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 RBAKDNA6NC62 111 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 AZU1P20160 251 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 ERCC8Q13216 396 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 TMEM263Q8WUH6 116 aaKnown RBP10.93□□□□□ -0.66
SHMT2-204ENST00000553324 PYGO2Q9BRQ0 406 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 NDUFAF3Q9BU61 184 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 Q9H3A6 140 aa10.93□□□□□ -0.66
SHMT2-204ENST00000553324 TAAR5O14804 337 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 PRM2P04554 102 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 ATP6V0CP27449 155 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 RAB2AP61019 212 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 ARL6IP6Q8N6S5 226 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 CMTM2Q8TAZ6 248 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 PHYHIPLQ96FC7 376 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 FAM19A4Q96LR4 140 aa10.92□□□□□ -0.66
SHMT2-204ENST00000553324 TRAV12-3A0A0B4J271 114 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 RNF222A6NCQ9 220 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 KLLNB2CW77 178 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 J3KRW8 73 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 GPX1P07203 203 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 CRISP2P16562 243 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 CDC34P49427 236 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-204ENST00000553324 ZNF138P52744 262 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 KIR3DS1Q14943 382 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 RNASE8Q8TDE3 154 aaKnown RBP10.91□□□□□ -0.66
SHMT2-204ENST00000553324 OTORQ9NRC9 128 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 ZNF492Q9P255 531 aa10.91□□□□□ -0.66
SHMT2-204ENST00000553324 IGKV2-40A0A087WW87 121 aaPredicted RBP10.9□□□□□ -0.66
SHMT2-204ENST00000553324 C7orf71A4D174 169 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 PGPA6NDG6 321 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 IGKV2D-40P01614 121 aaPredicted RBP10.9□□□□□ -0.66
SHMT2-204ENST00000553324 VGLL1Q99990 258 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 ACTR3CQ9C0K3 210 aaPredicted RBP10.9□□□□□ -0.66
SHMT2-204ENST00000553324 PLA2G2EQ9NZK7 142 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 LENEPQ9Y5L5 61 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 KMT2AQ03164 3969 aa10.9□□□□□ -0.66
SHMT2-204ENST00000553324 PLAC8L1A1L4L8 177 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 CBY3A6NI87 242 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 DIRC3C9JPN6 131 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 ZNF324O75467 553 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-204ENST00000553324 STAG3L2P0CL84 134 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 STAG3L3P0CL85 134 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 DEFB130BP0DP73 79 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 DEFB130AP0DP74 79 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 RNASE4P34096 147 aaKnown RBP10.89□□□□□ -0.67
SHMT2-204ENST00000553324 RPL7L1Q6DKI1 246 aaKnown RBP10.89□□□□□ -0.67
SHMT2-204ENST00000553324 RAB24Q969Q5 203 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 LINC00467Q9BRT7 94 aa10.89□□□□□ -0.67
SHMT2-204ENST00000553324 SNURFLB1AK76 121 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 ARPC5O15511 151 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 CXorf1O96002 111 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 P0DMU3 169 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 FAM231AP0DMU4 169 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 FAM231CP0DMU5 169 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 HTN3P15516 51 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 ZNF680Q8NEM1 530 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 TMED6Q8WW62 240 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 HYLS1Q96M11 299 aa10.88□□□□□ -0.67
SHMT2-204ENST00000553324 NOP10Q9NPE3 64 aaKnown RBP10.88□□□□□ -0.67
SHMT2-204ENST00000553324 G3V3Q6 166 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 HMGB3O15347 200 aaKnown RBP10.87□□□□□ -0.67
SHMT2-204ENST00000553324 ATP5G1P05496 136 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 ARL14EPLP0DKL9 152 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 ATP5G3P48201 142 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 CD300CQ08708 224 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 EIF4E3Q8N5X7 224 aaKnown RBP10.87□□□□□ -0.67
SHMT2-204ENST00000553324 ZFAND2AQ8N6M9 145 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 SUN5Q8TC36 379 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 SH3BGRL3Q9H299 93 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 TMEM167BQ9NRX6 74 aa10.87□□□□□ -0.67
SHMT2-204ENST00000553324 SERTM2A0A1B0GWG4 89 aa10.86□□□□□ -0.67
SHMT2-204ENST00000553324 EIF3GO75821 320 aaKnown RBP eCLIP10.86□□□□□ -0.67
SHMT2-204ENST00000553324 DAZ2Q13117 558 aaKnown RBP10.86□□□□□ -0.67
SHMT2-204ENST00000553324 BTN1A1Q13410 526 aa10.86□□□□□ -0.67
SHMT2-204ENST00000553324 ANXA2RQ3ZCQ2 193 aa10.86□□□□□ -0.67
SHMT2-204ENST00000553324 C15orf53Q8NAA6 179 aa10.86□□□□□ -0.67
SHMT2-204ENST00000553324 ST6GAL2Q96JF0 529 aa10.86□□□□□ -0.67
SHMT2-204ENST00000553324 HMSDA8MTL9 139 aa10.85□□□□□ -0.67
SHMT2-204ENST00000553324 RGS13O14921 159 aa10.85□□□□□ -0.67
SHMT2-204ENST00000553324 GCHFRP30047 84 aa10.85□□□□□ -0.67
SHMT2-204ENST00000553324 AKR1C8PQ5T2L2 129 aa10.85□□□□□ -0.67
SHMT2-204ENST00000553324 VPS13DQ5THJ4 4388 aa10.84□□□□□ -0.67
SHMT2-204ENST00000553324 F5H768 121 aa10.84□□□□□ -0.67
SHMT2-204ENST00000553324 K7EQM0 130 aa10.84□□□□□ -0.67
SHMT2-204ENST00000553324 ZNF345Q14585 488 aa10.84□□□□□ -0.67
SHMT2-204ENST00000553324 IGHV1OR15-1A0A075B7D0 117 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 A0A0D9SG52 128 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 CTXND1A0A1B0GTU2 59 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 IBA57Q5T440 356 aaKnown RBP10.83□□□□□ -0.68
SHMT2-204ENST00000553324 TMEM88Q6PEY1 159 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 GOLT1AQ6ZVE7 132 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 KCNRGQ8N5I3 272 aa10.83□□□□□ -0.68
SHMT2-204ENST00000553324 LINC00612Q8N6U2 182 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms