RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 RABL2BQ9UNT1 228 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 PXMP4Q9Y6I8 212 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 E5RGE8 158 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 K7EPK0 472 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 K7EQD1 137 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 CCNKO75909 580 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 IGLC2P0DOY2 106 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 SRIP30626 198 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 CD300CQ08708 224 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 SLC38A11Q08AI6 406 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 ERCC8Q13216 396 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 BTN1A1Q13410 526 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 IL18Q14116 193 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 C4orf46Q504U0 113 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 TMEM128Q5BJH2 165 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 C10orf126Q8N4M7 172 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 TP53TG3Q9ULZ0 132 aa8.51□□□□□ -1.05
SCAF11-208ENST00000546534 LRP1Q07954 4544 aaKnown RBP8.51□□□□□ -1.05
SCAF11-208ENST00000546534 KLLNB2CW77 178 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 HOXB5P09067 269 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 POLR2GP62487 172 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCAF11-208ENST00000546534 OPCMLQ14982 345 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 IBA57Q5T440 356 aaKnown RBP8.5□□□□□ -1.05
SCAF11-208ENST00000546534 PXDC1Q5TGL8 231 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 Q6ZSA8 131 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 KRTAP4-7Q9BYR0 210 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 NPVFQ9HCQ7 196 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 PSENENQ9NZ42 101 aa8.5□□□□□ -1.05
SCAF11-208ENST00000546534 TRGV4A0A0C4DH28 118 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 GOSR2O14653 212 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 OXTP01178 125 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 RNASE4P34096 147 aaKnown RBP8.49□□□□□ -1.05
SCAF11-208ENST00000546534 ZNF415Q09FC8 603 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 TMEM37Q8WXS4 190 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 DIRAS2Q96HU8 199 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 FAM19A4Q96LR4 140 aa8.49□□□□□ -1.05
SCAF11-208ENST00000546534 RCL1Q9Y2P8 373 aaKnown RBP8.49□□□□□ -1.05
SCAF11-208ENST00000546534 AGPAT2O15120 278 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 COX7A2P2O60397 106 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 MPDU1O75352 247 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 SFTA3P0C7M3 94 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 GYPEP15421 78 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 KRTAP10-4P60372 401 aaPredicted RBP8.48□□□□□ -1.05
SCAF11-208ENST00000546534 Q6ZQT7 251 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 ZNF479Q96JC4 524 aa8.48□□□□□ -1.05
SCAF11-208ENST00000546534 CCDC59Q9P031 241 aaKnown RBP8.48□□□□□ -1.05
SCAF11-208ENST00000546534 DNAH8Q96JB1 4490 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 TRAV5A0A0B4J249 113 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 IBA57-AS1B1ANH7 110 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 FNDC10F2Z333 226 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 M0R3E3 92 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 SFT2D2O95562 160 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 OR4E1P0C645 316 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 METTL15P1P0C7V9 234 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 GUK1Q16774 197 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 C21orf62-AS1Q17RA5 79 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 C10orf113Q5VZT2 155 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 ZNF546Q86UE3 836 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 IQCF2Q8IXL9 164 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 PCNPQ8WW12 178 aaKnown RBP8.47□□□□□ -1.05
SCAF11-208ENST00000546534 AGPAT4-IT1Q9H0P7 198 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 Q9HAA7 133 aa8.47□□□□□ -1.05
SCAF11-208ENST00000546534 IGHV1OR15-1A0A075B7D0 117 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 IGHV3-38A0A0C4DH36 116 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 SSSCA1O60232 199 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 ORM1P02763 201 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 GPX1P07203 203 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 CRISP2P16562 243 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 PPP1R1AQ13522 171 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 WFDC2Q14508 124 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 PRR9Q5T870 116 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 TMEM14EPQ6UXP3 125 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 OR10P1Q8NGE3 313 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 MRPL53Q96EL3 112 aaKnown RBP8.46□□□□□ -1.06
SCAF11-208ENST00000546534 SMIM8Q96KF7 97 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 LINC00477Q96M19 166 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 TXNDC17Q9BRA2 123 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 RABL2AQ9UBK7 228 aaPredicted RBP8.46□□□□□ -1.06
SCAF11-208ENST00000546534 MGAT4CQ9UBM8 478 aa8.46□□□□□ -1.06
SCAF11-208ENST00000546534 ZFAND2AQ8N6M9 145 aa8.45□□□□□ -1.06
SCAF11-208ENST00000546534 MGST2Q99735 147 aa8.45□□□□□ -1.06
SCAF11-208ENST00000546534 ARPC5LQ9BPX5 153 aa8.45□□□□□ -1.06
SCAF11-208ENST00000546534 RSL24D1Q9UHA3 163 aaKnown RBP8.45□□□□□ -1.06
SCAF11-208ENST00000546534 ZNF561-AS1K7EIQ3 104 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 ZNF253O75346 499 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 ARL16Q0P5N6 197 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 LINC01556Q5JQF7 62 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 SCXQ7RTU7 201 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 OR10G4Q8NGN3 311 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 BLNKQ8WV28 456 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 DNAJC4Q9NNZ3 241 aa8.44□□□□□ -1.06
SCAF11-208ENST00000546534 TRBV19A0A075B6N1 114 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 LOC100131303A0A0U1RQF7 123 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 C9JCJ5 164 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 NDUFB4O95168 129 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 NMBP08949 121 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 SPCS2Q15005 226 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 LINC01620Q4KN68 170 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 C9orf47Q6ZRZ4 202 aa8.43□□□□□ -1.06
SCAF11-208ENST00000546534 RAB2BQ8WUD1 216 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms