RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TIMM8BQ9Y5J9 83 aaPredicted RBP8.83□□□□□ -1
USP28-212ENST00000544750 TRAV26-1A0A087WT03 109 aa8.82□□□□□ -1
USP28-212ENST00000544750 H3BQ15 152 aa8.82□□□□□ -1
USP28-212ENST00000544750 BOLA2-SMG1P6H3BVE0 249 aa8.82□□□□□ -1
USP28-212ENST00000544750 PRB4P10163 310 aaPredicted RBP8.82□□□□□ -1
USP28-212ENST00000544750 HOXA5P20719 270 aa8.82□□□□□ -1
USP28-212ENST00000544750 FUSP35637 526 aaKnown RBP eCLIP8.82□□□□□ -1
USP28-212ENST00000544750 LINC00315P59091 139 aa8.82□□□□□ -1
USP28-212ENST00000544750 Q5BKY6 102 aa8.82□□□□□ -1
USP28-212ENST00000544750 BPIFA4PQ86YQ2 179 aa8.82□□□□□ -1
USP28-212ENST00000544750 TMEM256Q8N2U0 113 aa8.82□□□□□ -1
USP28-212ENST00000544750 RNASE8Q8TDE3 154 aaKnown RBP8.82□□□□□ -1
USP28-212ENST00000544750 GNPNAT1Q96EK6 184 aaPredicted RBP8.82□□□□□ -1
USP28-212ENST00000544750 SAT2Q96F10 170 aaPredicted RBP8.82□□□□□ -1
USP28-212ENST00000544750 LINC01587Q99440 93 aa8.82□□□□□ -1
USP28-212ENST00000544750 PFDN5Q99471 154 aa8.82□□□□□ -1
USP28-212ENST00000544750 WFDC1Q9HC57 220 aa8.82□□□□□ -1
USP28-212ENST00000544750 ZNF331Q9NQX6 463 aaPredicted RBP8.82□□□□□ -1
USP28-212ENST00000544750 RNF24Q9Y225 148 aa8.82□□□□□ -1
USP28-212ENST00000544750 H3BTX0 84 aa8.81□□□□□ -1
USP28-212ENST00000544750 CXCL2P19875 107 aa8.81□□□□□ -1
USP28-212ENST00000544750 CDPF1Q6NVV7 123 aa8.81□□□□□ -1
USP28-212ENST00000544750 LCN15Q6UWW0 184 aa8.81□□□□□ -1
USP28-212ENST00000544750 ZNF493Q6ZR52 646 aa8.81□□□□□ -1
USP28-212ENST00000544750 FRZBQ92765 325 aa8.81□□□□□ -1
USP28-212ENST00000544750 SMIM3Q9BZL3 60 aa8.81□□□□□ -1
USP28-212ENST00000544750 NOP10Q9NPE3 64 aaKnown RBP8.81□□□□□ -1
USP28-212ENST00000544750 H3BNG1 76 aa8.8□□□□□ -1
USP28-212ENST00000544750 M6PRP20645 277 aa8.8□□□□□ -1
USP28-212ENST00000544750 KRTAP10-1P60331 282 aa8.8□□□□□ -1
USP28-212ENST00000544750 OR5I1Q13606 314 aa8.8□□□□□ -1
USP28-212ENST00000544750 PSG3Q16557 428 aa8.8□□□□□ -1
USP28-212ENST00000544750 ZNF738Q8NE65 137 aa8.8□□□□□ -1
USP28-212ENST00000544750 TMEM263Q8WUH6 116 aaKnown RBP8.8□□□□□ -1
USP28-212ENST00000544750 FAM167A-AS1Q96KT0 104 aa8.8□□□□□ -1
USP28-212ENST00000544750 SLC50A1Q9BRV3 221 aa8.8□□□□□ -1
USP28-212ENST00000544750 PARD6GQ9BYG4 376 aaPredicted RBP8.8□□□□□ -1
USP28-212ENST00000544750 A0A0J9YY99 117 aa8.79□□□□□ -1
USP28-212ENST00000544750 G3V3Q6 166 aa8.79□□□□□ -1
USP28-212ENST00000544750 GIPP09681 153 aaPredicted RBP8.79□□□□□ -1
USP28-212ENST00000544750 PYYP10082 97 aa8.79□□□□□ -1
USP28-212ENST00000544750 MIR17HGQ75NE6 70 aa8.79□□□□□ -1
USP28-212ENST00000544750 OR8A1Q8NGG7 326 aa8.79□□□□□ -1
USP28-212ENST00000544750 OR10J6PQ8NGY7 276 aa8.79□□□□□ -1
USP28-212ENST00000544750 SLC25A2Q9BXI2 301 aa8.79□□□□□ -1
USP28-212ENST00000544750 TMEM14CQ9P0S9 112 aa8.79□□□□□ -1
USP28-212ENST00000544750 NDUFB4O95168 129 aa8.78□□□□□ -1
USP28-212ENST00000544750 HTN1P15515 57 aa8.78□□□□□ -1
USP28-212ENST00000544750 LRRC20Q8TCA0 184 aa8.78□□□□□ -1
USP28-212ENST00000544750 ASB13Q8WXK3 278 aa8.78□□□□□ -1
USP28-212ENST00000544750 C18orf15Q96N68 181 aa8.78□□□□□ -1
USP28-212ENST00000544750 AQP10Q96PS8 301 aa8.78□□□□□ -1
USP28-212ENST00000544750 KCNIP2Q9NS61 270 aa8.78□□□□□ -1
USP28-212ENST00000544750 TRBV19A0A075B6N1 114 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 PRAC2D3DTV9 90 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 ZNF253O75346 499 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 HIST1H1AQ02539 215 aaPredicted RBP8.77□□□□□ -1.01
USP28-212ENST00000544750 KIR3DS1Q14943 382 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 GUK1Q16774 197 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 RPUSD4Q96CM3 377 aaKnown RBP8.77□□□□□ -1.01
USP28-212ENST00000544750 MDFICQ9P1T7 246 aa8.77□□□□□ -1.01
USP28-212ENST00000544750 A0A096LPF7 62 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 RNF222A6NCQ9 220 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 C17orf112F2Z3M2 114 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 H7BYZ3 331 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 IFNA5P01569 189 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 SMR3BP02814 79 aaPredicted RBP8.76□□□□□ -1.01
USP28-212ENST00000544750 HIST1H1EP10412 219 aaKnown RBP8.76□□□□□ -1.01
USP28-212ENST00000544750 CDKN1BP46527 198 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 FFAR4Q5NUL3 377 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 VSIG2Q96IQ7 327 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 MRPL32Q9BYC8 188 aaKnown RBP8.76□□□□□ -1.01
USP28-212ENST00000544750 FUT9Q9Y231 359 aa8.76□□□□□ -1.01
USP28-212ENST00000544750 M0R3E3 92 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 ERVFC1-1P60608 527 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 RHOBP62745 196 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 PDE6HQ13956 83 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 OR2T35Q8NGX2 323 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 SCGB1C1Q8TD33 95 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 FXYD5Q96DB9 178 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 C20orf144Q9BQM9 153 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 TNFSF18Q9UNG2 199 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 TNFRSF18Q9Y5U5 241 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 HMCN2Q8NDA2 5059 aa8.75□□□□□ -1.01
USP28-212ENST00000544750 A0A087WTM6 91 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 GAGE12BA1L429 117 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 EREGO14944 169 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 SIVA1O15304 175 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 EIF3GO75821 320 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP28-212ENST00000544750 GAGE7O76087 117 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 GAGE12FP0CL80 117 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 GAGE12GP0CL81 117 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 GAGE12IP0CL82 117 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 DNAH10OSP0CZ25 163 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 ICAM4Q14773 271 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 BLNKQ8WV28 456 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 OR51M1Q9H341 326 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 TIMM9Q9Y5J7 89 aa8.74□□□□□ -1.01
USP28-212ENST00000544750 FXYD6-FXYD2A0A087WZ82 144 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 OR10J4P0C629 311 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms