RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SUN5Q8TC36 379 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 RXFP4Q8TDU9 374 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 DCANP1Q8TF63 244 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 VAX2Q9UIW0 290 aa9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 YTHDF2Q9Y5A9 579 aaKnown RBP9.17□□□□□ -0.94
CLSTN3-208ENST00000538933 RBFOX3A6NFN3 312 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 K7EQM0 130 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 ATP5G3P48201 142 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 PSG3Q16557 428 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 C5orf17Q8NAS9 161 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 PHLDA1Q8WV24 401 aaPredicted RBP9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 TXNDC17Q9BRA2 123 aa9.16□□□□□ -0.94
CLSTN3-208ENST00000538933 LOC102723971A0A1B0GUV8 181 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 SOCS3O14543 225 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 HLA-DMBP28068 263 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 DEFB131AP59861 70 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 MEF2BQ02080 365 aaPredicted RBP9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 PEA15Q15121 130 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 EBLN2Q6P2I7 272 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 LINC00336Q6ZUF6 198 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 RPUSD4Q96CM3 377 aaKnown RBP9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 MRPL53Q96EL3 112 aaKnown RBP9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 FAM210AQ96ND0 272 aa9.15□□□□□ -0.94
CLSTN3-208ENST00000538933 TRAV8-2A0A0B4J237 113 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 GGTLC3B5MD39 225 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 M0R3E3 92 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 CEBPGP53567 150 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 ZNF506Q5JVG8 444 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 COMMD7Q86VX2 200 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 FAM24BQ8N5W8 94 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 OR10J6PQ8NGY7 276 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 RARRES2Q99969 163 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 TCEAL7Q9BRU2 100 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 MAP6D1Q9H9H5 199 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 TREM1Q9NP99 234 aa9.14□□□□□ -0.95
CLSTN3-208ENST00000538933 ZNF705FA8MVS1 300 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 PEX7O00628 323 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 PDE6DO43924 150 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 AKR1C3P42330 323 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 GNG5P63218 68 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 HIST1H2BAQ96A08 127 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 C20orf173Q96LM9 149 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 ATG101Q9BSB4 218 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 MED9Q9NWA0 146 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 PPP1R14DQ9NXH3 145 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 EPDR1Q9UM22 224 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 TP53TG1Q9Y2A0 90 aa9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 APOBP04114 4563 aaKnown RBP9.13□□□□□ -0.95
CLSTN3-208ENST00000538933 AGRNO00468 2067 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 LOC102724200A0A096LPH7 203 aaPredicted RBP9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 SERTM2A0A1B0GWG4 89 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 RAB19A4D1S5 217 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 DIRC3C9JPN6 131 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 CNN1P51911 297 aaKnown RBP9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 UBE2G1P62253 170 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 HIST1H1AQ02539 215 aaPredicted RBP9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 GOLT1AQ6ZVE7 132 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 CYB561D1Q8N8Q1 229 aa9.12□□□□□ -0.95
CLSTN3-208ENST00000538933 IGKV2-40A0A087WW87 121 aaPredicted RBP9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 SCO2A0A1W2PP80 73 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 SPRY2O43597 315 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 DUSP14O95147 198 aaKnown RBP9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 IGKV2D-40P01614 121 aaPredicted RBP9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 TCRAP04437 139 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 PRB4P10163 310 aaPredicted RBP9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 ODF3L2Q3SX64 289 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 ACTL10Q5JWF8 245 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 TMEM78Q5T7P6 136 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 FOXI2Q6ZQN5 318 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 Q6ZWC4 215 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 APRG1Q8IVJ8 170 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 STHQ8IWL8 128 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 ARL6IP6Q8N6S5 226 aa9.11□□□□□ -0.95
CLSTN3-208ENST00000538933 LRP1BQ9NZR2 4599 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 LINC00862A6NCI5 91 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 F6UB75 175 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 NDUFA5Q16718 116 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 OR4B1Q8NGF8 309 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 OR8A1Q8NGG7 326 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 NDFIP1Q9BT67 221 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 SAV1Q9H4B6 383 aaPredicted RBP9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 SMDT1Q9H4I9 107 aa9.1□□□□□ -0.95
CLSTN3-208ENST00000538933 RBAKDNA6NC62 111 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 KNCNA6PVL3 124 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 PRAC2D3DTV9 90 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 TMEM250H0YL14 139 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 IGKV3-20P01619 116 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 S100A9P06702 114 aaKnown RBP9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 ZNF705DP0CH99 300 aaPredicted RBP9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 ZNF705BP0CI00 300 aaPredicted RBP9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 DEFB1P60022 68 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 ZNF674Q2M3X9 581 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 UQCC3Q6UW78 93 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 CCDC28AQ8IWP9 274 aa9.09□□□□□ -0.95
CLSTN3-208ENST00000538933 A0A0J9YX75 114 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 FBLL1A6NHQ2 334 aaKnown RBP9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 RTL8CO15255 209 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 ZNF124Q15973 351 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 DEFB135Q30KP9 77 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 PRNTQ86SH4 94 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms