RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RXFP4Q8TDU9 374 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 C20orf144Q9BQM9 153 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 PLECQ15149 4684 aaKnown RBP14.22□□□□□ -0.13
CPSF1-209ENST00000532725 LOC102723971A0A1B0GUV8 181 aa14.22□□□□□ -0.13
CPSF1-209ENST00000532725 AZU1P20160 251 aa14.22□□□□□ -0.13
CPSF1-209ENST00000532725 EMP1P54849 157 aa14.22□□□□□ -0.13
CPSF1-209ENST00000532725 C12orf74Q32Q52 190 aa14.22□□□□□ -0.13
CPSF1-209ENST00000532725 ZNF492Q9P255 531 aa14.22□□□□□ -0.13
CPSF1-209ENST00000532725 RBAKDNA6NC62 111 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 DIRC3C9JPN6 131 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 BCL2L11O43521 198 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 CXorf1O96002 111 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 SLC25A5P05141 298 aaKnown RBP14.21□□□□□ -0.13
CPSF1-209ENST00000532725 TAS2R60P59551 318 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 AKR1C8PQ5T2L2 129 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 TMUB2Q71RG4 321 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 ARL6IP6Q8N6S5 226 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 HYLS1Q96M11 299 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 PLA2G2EQ9NZK7 142 aa14.21□□□□□ -0.13
CPSF1-209ENST00000532725 CTXND1A0A1B0GTU2 59 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 KANTRA0A1W2PQU2 76 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 KLLNB2CW77 178 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 H7BYZ3 331 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 J3KRW8 73 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 SPART-AS1P0CW21 52 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 CRISP2P16562 243 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 TMEM78Q5T7P6 136 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 DKK2Q9UBU2 259 aa14.2□□□□□ -0.14
CPSF1-209ENST00000532725 YTHDF2Q9Y5A9 579 aaKnown RBP14.2□□□□□ -0.14
CPSF1-209ENST00000532725 TRAV12-3A0A0B4J271 114 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 NMBP08949 121 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 ZNF138P52744 262 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 LGALSLQ3ZCW2 172 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-209ENST00000532725 FAM74A1Q5RGS3 127 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 Q6ZTC4 211 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 ZFAND2AQ8N6M9 145 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 ZNF471Q9BX82 626 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-209ENST00000532725 TMEM167BQ9NRX6 74 aa14.19□□□□□ -0.14
CPSF1-209ENST00000532725 KLK5Q9Y337 293 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-209ENST00000532725 hCG_2014768A0A024R1R8 64 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 TRBV7-9A0A0J9YWB2 115 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 PLAC8L1A1L4L8 177 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 C11orf94C9JXX5 98 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 ZNF324O75467 553 aaPredicted RBP14.18□□□□□ -0.14
CPSF1-209ENST00000532725 SEC11BP0C7V7 166 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 CD300CQ08708 224 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 FAM222AQ5U5X8 452 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 ZNF767PQ75MW2 155 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 CMTM2Q8TAZ6 248 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 SACSQ9NZJ4 4579 aa14.18□□□□□ -0.14
CPSF1-209ENST00000532725 C7orf71A4D174 169 aa14.17□□□□□ -0.14
CPSF1-209ENST00000532725 C1QBP02746 253 aa14.17□□□□□ -0.14
CPSF1-209ENST00000532725 HTN1P15515 57 aa14.17□□□□□ -0.14
CPSF1-209ENST00000532725 RNASE4P34096 147 aaKnown RBP14.17□□□□□ -0.14
CPSF1-209ENST00000532725 LCE6AA0A183 80 aa14.16□□□□□ -0.14
CPSF1-209ENST00000532725 GPX1P07203 203 aa14.16□□□□□ -0.14
CPSF1-209ENST00000532725 Q8TAT8 98 aa14.16□□□□□ -0.14
CPSF1-209ENST00000532725 NIPSNAP3BQ9BS92 247 aa14.16□□□□□ -0.14
CPSF1-209ENST00000532725 TMPRSS5Q9H3S3 457 aa14.16□□□□□ -0.14
CPSF1-209ENST00000532725 RYR3Q15413 4870 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 TRAV10A0A0B4J240 114 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 TEX48A0A1B0GUV7 120 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 PFDN1O60925 122 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 FHITP49789 147 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 SUMO1P63165 101 aaKnown RBP14.15□□□□□ -0.14
CPSF1-209ENST00000532725 EIF5AP63241 154 aaKnown RBP14.15□□□□□ -0.14
CPSF1-209ENST00000532725 BTN1A1Q13410 526 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 PRR9Q5T870 116 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 ZNF493Q6ZR52 646 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 RNASE8Q8TDE3 154 aaKnown RBP14.15□□□□□ -0.14
CPSF1-209ENST00000532725 C2CD4CQ8TF44 421 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 TMED6Q8WW62 240 aa14.15□□□□□ -0.14
CPSF1-209ENST00000532725 A0A1W2PRE2 83 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 FGF8P55075 233 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-209ENST00000532725 GNG5P63218 68 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 GOLT1AQ6ZVE7 132 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 AKAP14Q86UN6 197 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 C16orf74Q96GX8 76 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 PYGO2Q9BRQ0 406 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 RPH3ALQ9UNE2 315 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 LENEPQ9Y5L5 61 aa14.14□□□□□ -0.15
CPSF1-209ENST00000532725 LYSTQ99698 3801 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 A0A1B0GVG6 124 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 LYRM9A8MSI8 78 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 GGTLC3B5MD39 225 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 UMAD1C9J7I0 102 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 Q6ZQT7 251 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 IQCF2Q8IXL9 164 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 C5orf17Q8NAS9 161 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 STOML3Q8TAV4 291 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 TMEM263Q8WUH6 116 aaKnown RBP14.13□□□□□ -0.15
CPSF1-209ENST00000532725 LINC00467Q9BRT7 94 aa14.13□□□□□ -0.15
CPSF1-209ENST00000532725 DEFB131BA0A096LNP1 70 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 MAP1LC3B2A6NCE7 125 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 TCRAP04437 139 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 TPT1P13693 172 aaKnown RBP14.12□□□□□ -0.15
CPSF1-209ENST00000532725 CCDC28AQ8IWP9 274 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 MBD3L1Q8WWY6 194 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 MAP1LC3BQ9GZQ8 125 aa14.12□□□□□ -0.15
CPSF1-209ENST00000532725 EPDR1Q9UM22 224 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms