RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CYB561D1Q8N8Q1 229 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 LINC00479Q96M42 142 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 TXNDC17Q9BRA2 123 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 TCEAL7Q9BRU2 100 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 MED9Q9NWA0 146 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 RBAKDNA6NC62 111 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 APOC4P55056 127 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 EBLN2Q6P2I7 272 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 AMTNQ6UX39 209 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 C9orf47Q6ZRZ4 202 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 Q8TAT8 98 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 HIST1H2BAQ96A08 127 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 SGK494Q96LW2 274 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 DERL1Q9BUN8 251 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 AGPAT4-IT1Q9H0P7 198 aa11.25□□□□□ -0.61
LSM1-203ENST00000520755 TRAV34A0A0B4J273 112 aa11.24□□□□□ -0.61
LSM1-203ENST00000520755 LINC00862A6NCI5 91 aa11.24□□□□□ -0.61
LSM1-203ENST00000520755 OR10J6PQ8NGY7 276 aa11.24□□□□□ -0.61
LSM1-203ENST00000520755 EIF5A2Q9GZV4 153 aaKnown RBP11.24□□□□□ -0.61
LSM1-203ENST00000520755 SERTM2A0A1B0GWG4 89 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 F6UZH7 168 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 PDE6DO43924 150 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 IGKV3-20P01619 116 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 SRP19P09132 144 aaKnown RBP11.23□□□□□ -0.61
LSM1-203ENST00000520755 CT45A10P0DMU9 189 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 Q86TA4 180 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 TMEM75Q8N9X5 138 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 OR4B1Q8NGF8 309 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 FAM19A4Q96LR4 140 aa11.23□□□□□ -0.61
LSM1-203ENST00000520755 RAB19A4D1S5 217 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 NDUFS6O75380 124 aaKnown RBP11.22□□□□□ -0.61
LSM1-203ENST00000520755 AKR1C3P42330 323 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 COMMD7Q86VX2 200 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 TVP23CQ96ET8 276 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 CLUHP3Q96NS8 147 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 CSTL1Q9H114 145 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 SLC35B3Q9H1N7 401 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 RETNQ9HD89 108 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 ZNF492Q9P255 531 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 KLF12Q9Y4X4 402 aa11.22□□□□□ -0.61
LSM1-203ENST00000520755 HUWE1Q7Z6Z7 4374 aaKnown RBP11.22□□□□□ -0.61
LSM1-203ENST00000520755 KIR2DL5BA0A0G2JN68 375 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 KIR2DL5BA0A0G2JPC4 375 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 TMEM250H0YL14 139 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 DUSP14O95147 198 aaKnown RBP11.21□□□□□ -0.61
LSM1-203ENST00000520755 CA1P00915 261 aaPredicted RBP11.21□□□□□ -0.61
LSM1-203ENST00000520755 NHLRC4P0CG21 123 aaPredicted RBP11.21□□□□□ -0.61
LSM1-203ENST00000520755 FLI1Q01543 452 aaPredicted RBP11.21□□□□□ -0.61
LSM1-203ENST00000520755 TMEM183BQ1AE95 376 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 KIR2DL5AQ8N109 375 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 KIR2DL5BQ8NHK3 375 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 SPATA25Q9BR10 227 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 TM2D3Q9BRN9 247 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 ZMAT4Q9H898 229 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 PSG8Q9UQ74 426 aa11.21□□□□□ -0.61
LSM1-203ENST00000520755 TRBV20OR9-2A0A075B6H5 130 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 UBE2CO00762 179 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 GIG44P09565 113 aaPredicted RBP11.2□□□□□ -0.62
LSM1-203ENST00000520755 RPL35P42766 123 aaKnown RBP11.2□□□□□ -0.62
LSM1-203ENST00000520755 ZNF138P52744 262 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 KIR3DS1Q14943 382 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 DEFB135Q30KP9 77 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 TMEM78Q5T7P6 136 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 PRR9Q5T870 116 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 MORN3Q6PF18 240 aaPredicted RBP11.2□□□□□ -0.62
LSM1-203ENST00000520755 IGF2BP2-AS1Q96M15 143 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 LINC00477Q96M19 166 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 ODF3Q96PU9 254 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 PPP1R14DQ9NXH3 145 aa11.2□□□□□ -0.62
LSM1-203ENST00000520755 TRBV6-1A0A0K0K1D8 114 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 K7EQM0 130 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 M0R2Z0 102 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 FXYD7P58549 80 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 PEA15Q15121 130 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 SPINK13Q1W4C9 94 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 PRNTQ86SH4 94 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 ZFAND2AQ8N6M9 145 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 FMC1Q96HJ9 113 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 PARLQ9H300 379 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 SMDT1Q9H4I9 107 aa11.19□□□□□ -0.62
LSM1-203ENST00000520755 CRXO43186 299 aaPredicted RBP11.18□□□□□ -0.62
LSM1-203ENST00000520755 LTAP01374 205 aa11.18□□□□□ -0.62
LSM1-203ENST00000520755 CRISP2P16562 243 aa11.18□□□□□ -0.62
LSM1-203ENST00000520755 NUTF2P61970 127 aaKnown RBP11.18□□□□□ -0.62
LSM1-203ENST00000520755 EIF4E3Q8N5X7 224 aaKnown RBP11.18□□□□□ -0.62
LSM1-203ENST00000520755 C8orf49Q96NF6 230 aa11.18□□□□□ -0.62
LSM1-203ENST00000520755 COL7A1Q02388 2944 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 FBLL1A6NHQ2 334 aaKnown RBP11.17□□□□□ -0.62
LSM1-203ENST00000520755 KLLNB2CW77 178 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 IGLV2-8P01709 118 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 CEBPGP53567 150 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 UBE2G1P62253 170 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 CENPWQ5EE01 88 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 Q6ZWC4 215 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 RCHY1Q96PM5 261 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 TREM1Q9NP99 234 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 LENEPQ9Y5L5 61 aa11.17□□□□□ -0.62
LSM1-203ENST00000520755 TRAV12-2A0A075B6T6 113 aa11.16□□□□□ -0.62
LSM1-203ENST00000520755 TRBV7-9A0A0J9YWB2 115 aa11.16□□□□□ -0.62
LSM1-203ENST00000520755 PGPEP1LA6NFU8 196 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms