RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KIAA2026Q5HYC2 2103 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 IGKV2D-24A0A075B6R9 120 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 TRAV36DV7A0A075B6V5 113 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 LOC102725191A0A1B0GVB3 256 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 CORTO00230 105 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 ZNF737O75373 536 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 NRASP01111 189 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 KRASP01116 189 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 IFNA5P01569 189 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 IGLV3-1P01715 115 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 SLC25A6P12236 298 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 PPP1CAP62136 330 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 LRRC75BQ2VPJ9 315 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 TMEM249Q2WGJ8 235 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 SP6Q3SY56 376 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 ABCA11PQ4W5N1 156 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 FAM78BQ5VT40 261 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 NIT1Q86X76 327 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 DEFB125Q8N687 156 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 OR52R1Q8NGF1 315 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 MRPL30Q8TCC3 161 aaKnown RBP4.52□□□□□ -1.69
LSM1-202ENST00000520286 PSMF1Q92530 271 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 REEP6Q96HR9 211 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 METTL26Q96S19 204 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 RNF5Q99942 180 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 CHCHD7Q9BUK0 85 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 PBOV1Q9GZY1 135 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 BANF2Q9H503 90 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 VSIRQ9H7M9 311 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 FAM60AQ9NP50 221 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 C21orf62Q9NYP8 219 aa4.52□□□□□ -1.69
LSM1-202ENST00000520286 ITPR2Q14571 2701 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 IGKV1-9A0A0C4DH69 117 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 CENPVL3A0A0U1RRI6 287 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 ZNF878C9JN71 531 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 C17orf112F2Z3M2 114 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 SSSCA1O60232 199 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 ZNF324O75467 553 aaPredicted RBP4.51□□□□□ -1.69
LSM1-202ENST00000520286 NPY1RP25929 384 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 BLVRBP30043 206 aaPredicted RBP4.51□□□□□ -1.69
LSM1-202ENST00000520286 GABRA2P47869 451 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 HINT1P49773 126 aaPredicted RBP4.51□□□□□ -1.69
LSM1-202ENST00000520286 GRB2P62993 217 aaKnown RBP4.51□□□□□ -1.69
LSM1-202ENST00000520286 EBI3Q14213 229 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 PMVKQ15126 192 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 OR8B8Q15620 311 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 PMCHL1Q16048 86 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 FBXL19-AS1Q494R0 122 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 OR10J3Q5JRS4 329 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 SPIN3Q5JUX0 258 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 DNM1P34Q6PK57 102 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 LCN15Q6UWW0 184 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 DGAT2L6Q6ZPD8 337 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 SELENOHQ8IZQ5 122 aaKnown RBP4.51□□□□□ -1.69
LSM1-202ENST00000520286 GAPTQ8N292 157 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 OR51T1Q8NGJ9 327 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 OR2Y1Q8NGV0 311 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 C11orf40Q8WZ69 217 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 ZNF286AQ9HBT8 521 aa4.51□□□□□ -1.69
LSM1-202ENST00000520286 C2CD3Q4AC94 2353 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 C3orf85A0A1B0GTC6 90 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 CTXND1A0A1B0GTU2 59 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 GRIFINA4D1Z8 144 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 K7EM74 188 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 PLPP3O14495 311 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 DEGS1O15121 323 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 CST7O76096 145 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 S1PR2O95136 353 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 MPZL1O95297 269 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 HLA-DRB1P01911 266 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 C3orf79P0CE67 100 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 IGLC1P0CG04 106 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 SMIM17P0DL12 118 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 SPTBP11277 2137 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 NPPCP23582 126 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 S100A7P31151 101 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 PSMB3P49720 205 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 COX19Q49B96 90 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 CLEC19AQ6UXS0 136 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 Q6ZS49 121 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 SIGLECL1Q8N7X8 197 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 SGMS2Q8NHU3 365 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 WDR61Q9GZS3 305 aaKnown RBP4.5□□□□□ -1.69
LSM1-202ENST00000520286 HES4Q9HCC6 221 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 TAAR3PQ9P1P4 343 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 PRO0628Q9UI54 55 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 TBL2Q9Y4P3 447 aaKnown RBP4.5□□□□□ -1.69
LSM1-202ENST00000520286 LHFPL6Q9Y693 200 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 TLN1Q9Y490 2541 aaKnown RBP4.5□□□□□ -1.69
LSM1-202ENST00000520286 MYOFQ9NZM1 2061 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 CEP192Q8TEP8 1941 aa4.5□□□□□ -1.69
LSM1-202ENST00000520286 UTP20O75691 2785 aaKnown RBP4.49□□□□□ -1.69
LSM1-202ENST00000520286 PIGBOS1A0A0B4J2F0 54 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SPTY2D1-AS1A0A0U1RR47 76 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 F2Z2F3 143 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SLC31A1O15431 190 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 TNFP01375 233 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 IGKV1D-33P01593 117 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 IGKV1-33P01594 117 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 MT-ND6P03923 174 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms