RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 C17orf77Q96MU5 243 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 ZNRD1Q9P1U0 126 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 REV3LO60673 3130 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 TRGV11A0A075B6L2 103 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 SAA1P0DJI8 122 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 GP9P14770 177 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 SLC25A16P16260 332 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 M0R3E3 92 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 LYZP61626 148 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 NXT2Q9NPJ8 142 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 OTORQ9NRC9 128 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 SIGLEC9Q9Y336 463 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 PRRC2CQ9Y520 2896 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 B3GALT5-AS1P59052 145 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 HCP5Q6MZN7 132 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 FAM90A1Q86YD7 464 aa9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 RPUSD1Q9UJJ7 312 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-213ENST00000511496 WIPF1O43516 503 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 SCRG1O75711 98 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 PMVKQ15126 192 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 CD177Q8N6Q3 437 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 DUX1O43812 170 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 CEMP1Q6PRD7 247 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 C11orf53Q8IXP5 236 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 ZNRF1Q8ND25 227 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 DEFB118Q96PH6 123 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 IGHV3OR15-7A0A075B7D8 119 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 TIMM23O14925 209 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 MRPS12O15235 138 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 PLNP26678 52 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 PRDX2P32119 198 aa9.44□□□□□ -0.9
LIMCH1-213ENST00000511496 RBAKDNA6NC62 111 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 CFC1BP0CG36 223 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 CFC1P0CG37 223 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 Q1RN00 199 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 K7ESF4 209 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 WT1-ASQ06250 92 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 DUX3Q96PT4 197 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 TIMD4Q96H15 378 aa9.43□□□□□ -0.9
LIMCH1-213ENST00000511496 CHD9Q3L8U1 2897 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 TM4SF5O14894 197 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 SH2D1AO60880 128 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 CECR9P0C854 216 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 RPS19BP1Q86WX3 136 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 OR4C13Q8NGP0 309 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 IGLV3-12A0A075B6K2 115 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 H7C1H1 209 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 LRRC75A-AS1Q8N1F1 130 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 BAALCQ8WXS3 180 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 PRO1854Q9UHT4 67 aa9.42□□□□□ -0.9
LIMCH1-213ENST00000511496 F8VRH5 84 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 MRPL20Q9BYC9 149 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 WDFY4Q6ZS81 3184 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 MAGEA5P43359 124 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 ATP5IP56385 69 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 TCF15Q12870 199 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 ZCCHC24Q8N2G6 241 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 C3orf22Q8N5N4 141 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 SLC25A39Q9BZJ4 359 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 H3BMM0 161 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 C6orf15Q6UXA7 325 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 TMEM75Q8N9X5 138 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 UBE2WQ96B02 151 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 RNF185Q96GF1 192 aa9.41□□□□□ -0.9
LIMCH1-213ENST00000511496 LINC01619G3V211 115 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 CDX4O14627 284 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 ORM1P02763 201 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 CD3EP07766 207 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 SUB1P53999 127 aaKnown RBP eCLIP9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 POU2AF1Q16633 256 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 ASCL5Q7RTU5 278 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 NDUFA4L2Q9NRX3 87 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 HERVK_113P61574 105 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 LAGE3Q14657 143 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 HRCT1Q6UXD1 115 aa9.4□□□□□ -0.9
LIMCH1-213ENST00000511496 TRAV26-2A0A0B4J265 109 aa9.4□□□□□ -0.91
LIMCH1-213ENST00000511496 IGHG4P01861 327 aa9.4□□□□□ -0.91
LIMCH1-213ENST00000511496 LGALS9O00182 355 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 EGR2P11161 476 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 C4orf26Q17RF5 130 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 Q8N8P6 123 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 A0A1W2PPC4 97 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 LINC01620Q4KN68 170 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 GAGE2AQ6NT46 116 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 THAP8Q8NA92 274 aa9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 CITED2Q99967 270 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 ZNF71Q9NQZ8 489 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-213ENST00000511496 ELANEP08246 267 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 C2orf82Q6UX34 121 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 Q6ZS46 218 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 LINC00527Q9UJ94 153 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 PCOLCEQ15113 449 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 PRR7Q8TB68 274 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 SCGB3A1Q96QR1 104 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 PRR25Q96S07 402 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 K7EM74 188 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 ZNF22P17026 224 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 HLA-DMBP28068 263 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 LINC01559Q495D7 138 aa9.38□□□□□ -0.91
LIMCH1-213ENST00000511496 ZNF256Q9Y2P7 627 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms