RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 EIF5AP63241 154 aaKnown RBP11.98□□□□□ -0.49
SNCA-209ENST00000506244 ARL6IP6Q8N6S5 226 aa11.98□□□□□ -0.49
SNCA-209ENST00000506244 C16orf74Q96GX8 76 aa11.98□□□□□ -0.49
SNCA-209ENST00000506244 CELA1Q9UNI1 258 aa11.98□□□□□ -0.49
SNCA-209ENST00000506244 YTHDF2Q9Y5A9 579 aaKnown RBP11.98□□□□□ -0.49
SNCA-209ENST00000506244 TRBV7-9A0A0J9YWB2 115 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 LCE6AA0A183 80 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 CTXND1A0A1B0GTU2 59 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 ZNF705GA8MUZ8 300 aaPredicted RBP11.97□□□□□ -0.49
SNCA-209ENST00000506244 BCL2L11O43521 198 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 EIF3GO75821 320 aaKnown RBP eCLIP11.97□□□□□ -0.49
SNCA-209ENST00000506244 GCHFRP30047 84 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 ERCC8Q13216 396 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 Q6ZNX1 250 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 Q6ZTC4 211 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 OR11H4Q8NGC9 324 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 C2CD4CQ8TF44 421 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 AGPAT4-IT1Q9H0P7 198 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 CYTL1Q9NRR1 136 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 DKK2Q9UBU2 259 aa11.97□□□□□ -0.49
SNCA-209ENST00000506244 DYNC2H1Q8NCM8 4307 aaKnown RBP11.97□□□□□ -0.49
SNCA-209ENST00000506244 C7orf71A4D174 169 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 J3KRW8 73 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 PFDN1O60925 122 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 CRISP2P16562 243 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 ZNF138P52744 262 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 TCTAP57738 103 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 FAM222AQ5U5X8 452 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 ZNF493Q6ZR52 646 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 TCTE3Q8IZS6 198 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 TMEM263Q8WUH6 116 aaKnown RBP11.96□□□□□ -0.49
SNCA-209ENST00000506244 FAM19A4Q96LR4 140 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 HYLS1Q96M11 299 aa11.96□□□□□ -0.49
SNCA-209ENST00000506244 ZNF471Q9BX82 626 aaPredicted RBP11.96□□□□□ -0.49
SNCA-209ENST00000506244 PGPA6NDG6 321 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 LYRM9A8MSI8 78 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 KLLNB2CW77 178 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 DIRC3C9JPN6 131 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 GPX1P07203 203 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 HTN1P15515 57 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 C12orf74Q32Q52 190 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 CCDC28AQ8IWP9 274 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 IQCF2Q8IXL9 164 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 VGLL1Q99990 258 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 PYGO2Q9BRQ0 406 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 ZNF492Q9P255 531 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 LENEPQ9Y5L5 61 aa11.95□□□□□ -0.5
SNCA-209ENST00000506244 TRAV12-3A0A0B4J271 114 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 SERTM2A0A1B0GWG4 89 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 KIR3DS1Q14943 382 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 C5orf17Q8NAS9 161 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 SUN5Q8TC36 379 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 TMED6Q8WW62 240 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 ST6GAL2Q96JF0 529 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 RPH3ALQ9UNE2 315 aa11.94□□□□□ -0.5
SNCA-209ENST00000506244 TENM2Q9NT68 2774 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 UMAD1C9J7I0 102 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 K7EQM0 130 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 SEC11BP0C7V7 166 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 DAD1P61803 113 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 LYSTQ99698 3801 aa11.93□□□□□ -0.5
SNCA-209ENST00000506244 DEFB131BA0A096LNP1 70 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 TPT1P13693 172 aaKnown RBP11.92□□□□□ -0.5
SNCA-209ENST00000506244 ZNF767PQ75MW2 155 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 SSX7Q7RTT5 188 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 AKAP14Q86UN6 197 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 Q8TAT8 98 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 STOML3Q8TAV4 291 aa11.92□□□□□ -0.5
SNCA-209ENST00000506244 RNASE8Q8TDE3 154 aaKnown RBP11.92□□□□□ -0.5
SNCA-209ENST00000506244 TIMM8BQ9Y5J9 83 aaPredicted RBP11.92□□□□□ -0.5
SNCA-209ENST00000506244 ALMS1Q8TCU4 4167 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 A0A1W2PRE2 83 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 MAP1LC3B2A6NCE7 125 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 RNASE4P34096 147 aaKnown RBP11.91□□□□□ -0.5
SNCA-209ENST00000506244 BTN1A1Q13410 526 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 ZNF726P1Q15940 193 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 GOLT1AQ6ZVE7 132 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 TMUB2Q71RG4 321 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 ZFAND2AQ8N6M9 145 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 ZNF680Q8NEM1 530 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 LINC00467Q9BRT7 94 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 MAP1LC3BQ9GZQ8 125 aa11.91□□□□□ -0.5
SNCA-209ENST00000506244 SNURFLB1AK76 121 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 IGLL5B9A064 214 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 C1QBP02746 253 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 AZU1P20160 251 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 DPPA3Q6W0C5 159 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 LINC00476Q8WZB0 136 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 NDFIP1Q9BT67 221 aa11.9□□□□□ -0.5
SNCA-209ENST00000506244 NKX6-2Q9C056 277 aaPredicted RBP11.9□□□□□ -0.5
SNCA-209ENST00000506244 hCG_2014768A0A024R1R8 64 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 PLAC8L1A1L4L8 177 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 FBLL1A6NHQ2 334 aaKnown RBP11.89□□□□□ -0.51
SNCA-209ENST00000506244 RGS13O14921 159 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 PRM2P04554 102 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 CD300CQ08708 224 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 EIF5AL1Q6IS14 154 aaKnown RBP11.89□□□□□ -0.51
SNCA-209ENST00000506244 EIF4E3Q8N5X7 224 aaKnown RBP11.89□□□□□ -0.51
SNCA-209ENST00000506244 FAM210BQ96KR6 192 aa11.89□□□□□ -0.51
SNCA-209ENST00000506244 GGTLC3B5MD39 225 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms