RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SPTAN1Q13813 2472 aaKnown RBP10.53□□□□□ -0.72
PTPRF-215ENST00000496447 A0A1B0GUS0 222 aa10.53□□□□□ -0.72
PTPRF-215ENST00000496447 A0A1W2PPM0 123 aa10.52□□□□□ -0.72
PTPRF-215ENST00000496447 KLK9Q9UKQ9 250 aa10.52□□□□□ -0.72
PTPRF-215ENST00000496447 CADP27708 2225 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 NDUFA4O00483 81 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 BVES-AS1Q5T3Y7 98 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 EDA2RQ9HAV5 297 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE12JA6NER3 117 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 PRB1P04280 392 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 IFITM1P13164 125 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE4Q13068 117 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE5Q13069 117 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 LINC00311Q8N616 119 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 RNASE8Q8TDE3 154 aaKnown RBP10.52□□□□□ -0.73
PTPRF-215ENST00000496447 LRRK1Q38SD2 2015 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 DOCK7Q96N67 2140 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 WISP1O95388 367 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 C18orf32Q8TCD1 76 aa10.52□□□□□ -0.73
PTPRF-215ENST00000496447 RHODO00212 210 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 CDK2AP2O75956 126 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE6Q13070 117 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 TRPT1Q86TN4 253 aaKnown RBP10.51□□□□□ -0.73
PTPRF-215ENST00000496447 IGLC7A0M8Q6 106 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 PHF3Q92576 2039 aaKnown RBP10.51□□□□□ -0.73
PTPRF-215ENST00000496447 IGLL1P15814 213 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 C2orf82Q6UX34 121 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 F8WEM9 126 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 SMKR1H3BMG3 65 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 COX8AP10176 69 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 GRNP28799 593 aaKnown RBP10.51□□□□□ -0.73
PTPRF-215ENST00000496447 LYPD6BQ8NI32 183 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 TMEM158Q8WZ71 300 aa10.51□□□□□ -0.73
PTPRF-215ENST00000496447 KIAA1671Q9BY89 1806 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 AMN1Q8IY45 258 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 IGHV3-16A0A0C4DH30 117 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 K7EM74 188 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 FAM120AOSQ5T036 256 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 TRBV20-1A0A075B6N2 111 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 ELANEP08246 267 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 WT1P19544 449 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-215ENST00000496447 ARTNQ5T4W7 220 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 TMEM75Q8N9X5 138 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 KIAA2026Q5HYC2 2103 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE7O76087 117 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE12FP0CL80 117 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE12GP0CL81 117 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 GAGE12IP0CL82 117 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 DEFB113Q30KQ7 82 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 ETDBQ3ZM63 59 aa10.5□□□□□ -0.73
PTPRF-215ENST00000496447 C8orf86Q6ZUL3 223 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 LY6G5BQ8NDX9 201 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 SHISA9B4DS77 424 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 NDUFS7O75251 213 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 PAX9P55771 341 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 LINC00479Q96M42 142 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 INS-IGF2F8WCM5 200 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 ZNF561-AS1K7EIQ3 104 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 ZMAT4Q9H898 229 aa10.49□□□□□ -0.73
PTPRF-215ENST00000496447 IGHV1OR15-1A0A075B7D0 117 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 MYMXA0A1B0GTQ4 84 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 VOPP1Q96AW1 172 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 TRBV25-1A0A075B6N4 114 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 DEFB112Q30KQ8 113 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 PRIMA1Q86XR5 153 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 GFRA4Q9GZZ7 299 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 ZNF407Q9C0G0 2248 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 SLAQ13239 276 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 TIMM21Q9BVV7 248 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 ABCA1O95477 2261 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 C8orf49Q96NF6 230 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 TPSG1Q9NRR2 321 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 LAMTOR3Q9UHA4 124 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 VPREB3Q9UKI3 123 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 SPXQ9BT56 116 aa10.48□□□□□ -0.73
PTPRF-215ENST00000496447 YLPM1P49750 1951 aaKnown RBP10.48□□□□□ -0.73
PTPRF-215ENST00000496447 LEPROTO15243 131 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 LGALS1P09382 135 aaKnown RBP10.47□□□□□ -0.73
PTPRF-215ENST00000496447 DEFB125Q8N687 156 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 TRBV19A0A075B6N1 114 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 KAAG1Q9UBP8 84 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 SS18L2Q9UHA2 77 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 TP53BP1Q12888 1972 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-215ENST00000496447 CACNA1HO95180 2353 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 TRAV12-2A0A075B6T6 113 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-215ENST00000496447 ZC2HC1BQ5TFG8 222 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 WDR81Q562E7 1941 aa10.47□□□□□ -0.73
PTPRF-215ENST00000496447 C15orf65H3BRN8 121 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 SIVA1O15304 175 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 HOXB4P17483 251 aaPredicted RBP10.46□□□□□ -0.73
PTPRF-215ENST00000496447 IGHV4-59P01825 116 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 DIAPH2-AS1Q14236 149 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 ZNF524Q96C55 264 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 C9JAW5 83 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 ANAPC10Q9UM13 185 aa10.46□□□□□ -0.73
PTPRF-215ENST00000496447 IGHV1-24A0A0C4DH33 117 aa10.46□□□□□ -0.74
PTPRF-215ENST00000496447 C22orf46C9J442 243 aa10.46□□□□□ -0.74
PTPRF-215ENST00000496447 IGF2-ASQ6U949 168 aa10.46□□□□□ -0.74
PTPRF-215ENST00000496447 TANC1Q9C0D5 1861 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms