RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 IGLC2P0DOY2 106 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 IGLC3P0DOY3 106 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 FABP4P15090 132 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MYL12AP19105 171 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 EVI2AP22794 236 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 NFYAP23511 347 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 CRHBPP24387 322 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 FKBP2P26885 142 aaKnown RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 ATP6V0CP27449 155 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CMPK1P30085 196 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 G6PCP35575 357 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR1E2P47887 323 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 GNG4P50150 75 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CTBP2P56545 445 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 PIGPP57054 158 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TAS2R20P59543 309 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 NCS1P62166 190 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H3AP68431 136 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 H3F3AP84243 136 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 Q0VG73 95 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 PRDX4Q13162 271 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CATR1Q13166 79 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 BATFQ16520 125 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 HIST3H3Q16695 136 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 IAH1Q2TAA2 248 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 AKR1C8PQ5T2L2 129 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 HIST2H3PS2Q5TEC6 136 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 AADACL3Q5VUY0 350 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TEX36Q5VZQ5 186 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 Q6AWC8 147 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 EDC4Q6P2E9 1401 aaKnown RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 EBLN2Q6P2I7 272 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 AGTRAPQ6RW13 159 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 Q6ZUT4 128 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 HIST2H3AQ71DI3 136 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CROCCP2Q86T23 111 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OOSP2Q86WS3 158 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ATOH7Q8N100 152 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TMEM86AQ8N2M4 240 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TTC9CQ8N5M4 171 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ZFAND2AQ8N6M9 145 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TCTEX1D1Q8N7M0 179 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR5A2Q8NGI9 324 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR13C6PQ8NH95 151 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 JOSD2Q8TAC2 188 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SKA2Q8WVK7 121 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 LSM10Q969L4 123 aaKnown RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 TMEM106AQ96A25 262 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 PLEKHB2Q96CS7 222 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MUCL1Q96DR8 90 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 DIRAS2Q96HU8 199 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ERMAPQ96PL5 475 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 GPER1Q99527 375 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 HSPB9Q9BQS6 159 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 PRADC1Q9BSG0 188 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 DERL1Q9BUN8 251 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SEC11CQ9BY50 192 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SMIM3Q9BZL3 60 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR51E2Q9H255 320 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TAF9BQ9HBM6 251 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 BCL2L10Q9HD36 194 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SMCO4Q9NRQ5 59 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR5AC2Q9NZP5 309 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CACFD1Q9UGQ2 172 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TRAPPC2LQ9UL33 140 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 FUT9Q9Y231 359 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 POLR1DQ9Y2S0 133 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 KLK5Q9Y337 293 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 MED31Q9Y3C7 131 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MRPS16Q9Y3D3 137 aaKnown RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 AP4S1Q9Y587 144 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MYO7BQ6PIF6 2116 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 FLG2Q5D862 2391 aaPredicted RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 MYO7AQ13402 2215 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 NHSL1Q5SYE7 1610 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 LRRC9Q6ZRR7 1453 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 DUOX1Q9NRD9 1551 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C10orf71Q711Q0 1435 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TRAV26-2A0A0B4J265 109 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 A0A0D9SEW6 157 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 A0A0G2JQZ4 141 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 FAM236AA0A1B0GUQ0 79 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 FAM236BA0A1B0GV22 79 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TCRBV3S1A0A5B6 114 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 hADV38S2A0JD32 116 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C7orf77A4D0Y5 90 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C7orf71A4D174 169 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ARRDC5A6NEK1 342 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR4C45A6NMZ5 311 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF727A8MUV8 499 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 EEF1E1-BLOC1S5C9J1V9 151 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 E7EQ34 232 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 K7EP34 96 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 M0R233 179 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 CDC42EP2O14613 210 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 NPFFO15130 113 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 NUPR1O60356 82 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 HYPMO75409 117 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR2H2O95918 312 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms