RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 DAZ1Q9NQZ3 744 aaKnown RBP4.13□□□□□ -1.75
COL17A1-206ENST00000483876 SERTAD4Q9NUC0 356 aa4.13□□□□□ -1.75
COL17A1-206ENST00000483876 AURKAIP1Q9NWT8 199 aaPredicted RBP4.13□□□□□ -1.75
COL17A1-206ENST00000483876 SMPXQ9UHP9 88 aa4.13□□□□□ -1.75
COL17A1-206ENST00000483876 PSG8Q9UQ74 426 aa4.13□□□□□ -1.75
COL17A1-206ENST00000483876 UFC1Q9Y3C8 167 aa4.13□□□□□ -1.75
COL17A1-206ENST00000483876 SACSQ9NZJ4 4579 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 IGHV3-35A0A0C4DH35 117 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 IGHV7-4-1A0A0J9YVY3 117 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 TRBV7-9A0A0J9YWB2 115 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 ZNF320A2RRD8 509 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 IZUMO1RA6ND01 250 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 ZNF705GA8MUZ8 300 aaPredicted RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 H3BTX0 84 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 SLC17A3O00476 420 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 P01737 135 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 MT-ND6P03923 174 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 SNRPCP09234 159 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 LGALS1P09382 135 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 MGST1P10620 155 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 COA6Q5JTJ3 125 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 ACTL10Q5JWF8 245 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 CASC10Q5T4H9 136 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 WDR73Q6P4I2 378 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 UNQ9165/PRO28630Q6UXU0 137 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 ATP5L2Q7Z4Y8 100 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 Q86TA4 180 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 PRR25Q96S07 402 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 RNASE7Q9H1E1 156 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 RPP21Q9H633 154 aaKnown RBP4.12□□□□□ -1.75
COL17A1-206ENST00000483876 C16orf95Q9H693 158 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 ESM1Q9NQ30 184 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 NAT8BQ9UHF3 227 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 LENEPQ9Y5L5 61 aa4.12□□□□□ -1.75
COL17A1-206ENST00000483876 TRAV8-2A0A0B4J237 113 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 A0A1B0GW15 77 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 A8MWP6 167 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 M0R3E3 92 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 UBE2CO00762 179 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 OVOL1O14753 267 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 CHEK1O14757 476 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BKO60814 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 TRBV12-3P01733 135 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 IGHV3-11P01762 117 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 APOHP02749 345 aaPredicted RBP4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BJP06899 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 RNASE1P07998 156 aaKnown RBP4.11□□□□□ -1.75
COL17A1-206ENST00000483876 TRGC1P0CF51 173 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 CT45A10P0DMU9 189 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HOXA5P20719 270 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BOP23527 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BBP33778 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BDP58876 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 SNRPEP62304 92 aaKnown RBP4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BCP62807 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 KLF5Q13887 457 aaPredicted RBP4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST2H2BEQ16778 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.11□□□□□ -1.75
COL17A1-206ENST00000483876 Q6AWC8 147 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 C9orf47Q6ZRZ4 202 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 C8orf86Q6ZUL3 223 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 PRNTQ86SH4 94 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 FRZBQ92765 325 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BHQ93079 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 LINC00477Q96M19 166 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BNQ99877 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 HIST1H2BMQ99879 126 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 RHPN1-AS1Q9BWJ2 59 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 NRN1Q9NPD7 142 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 TRAPPC1Q9Y5R8 145 aa4.11□□□□□ -1.75
COL17A1-206ENST00000483876 TRAV8-1A0A0A6YYK1 113 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 XKRY2A2RUG3 117 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 FAM181BA6NEQ2 426 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 FABP5P3A8MUU1 101 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 SOCS3O14543 225 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 HLA-DQA1P01909 254 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 RPLP1P05386 114 aaKnown RBP4.1□□□□□ -1.75
COL17A1-206ENST00000483876 ID1P41134 155 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 CRIP1P50238 77 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 RPS20P60866 119 aaKnown RBP4.1□□□□□ -1.75
COL17A1-206ENST00000483876 TMEM95Q3KNT9 176 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 FAM162BQ5T6X4 162 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 SAMD5Q5TGI4 173 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 LINC00322Q6ZN03 302 aaPredicted RBP4.1□□□□□ -1.75
COL17A1-206ENST00000483876 RBPMS2Q6ZRY4 209 aaKnown RBP4.1□□□□□ -1.75
COL17A1-206ENST00000483876 Q6ZSV7 163 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 ZFP82Q8N141 532 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 GBGT1Q8N5D6 347 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 KLHDC1Q8N7A1 406 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 NHLRC2Q8NBF2 726 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 C4orf3Q8WVX3 66 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 ASCL2Q99929 193 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 NDFIP1Q9BT67 221 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 RPH3ALQ9UNE2 315 aa4.1□□□□□ -1.75
COL17A1-206ENST00000483876 IGHV3OR16-8A0A075B7F1 116 aa4.09□□□□□ -1.75
COL17A1-206ENST00000483876 TRAV2A0A0B4J234 112 aa4.09□□□□□ -1.75
COL17A1-206ENST00000483876 DNAJC9-AS1A6NH13 148 aa4.09□□□□□ -1.75
COL17A1-206ENST00000483876 HIGD1CA8MV81 97 aa4.09□□□□□ -1.75
COL17A1-206ENST00000483876 ZNF705FA8MVS1 300 aaPredicted RBP4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms