RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 C12orf4Q9NQ89 552 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 SHPKQ9UHJ6 478 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 KLK9Q9UKQ9 250 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 ARL2BPQ9Y2Y0 163 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 TGIF2-C20orf24A0A0A6YYL0 155 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 TRAV8-4A0A0B4J246 113 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 DAPL1A0PJW8 107 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 UBDO15205 165 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 SERPINB7O75635 380 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 P01737 135 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 HIST1H1BP16401 226 aaKnown RBP2.73□□□□□ -1.97
HMGB1-207ENST00000468384 F2RP25116 425 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 RPL12P30050 165 aaKnown RBP2.73□□□□□ -1.97
HMGB1-207ENST00000468384 CCR6P51684 374 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 MTPNP58546 118 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 KRTAP10-10P60014 251 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 PPP1R1AQ13522 171 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 KRTAP13-3Q3SY46 172 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 MORN2Q502X0 79 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 RPL39P5Q59GN2 51 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 GDF5OSQ5U4N7 250 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 LINC00173Q6ZV60 143 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 SMIM15Q7Z3B0 74 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 GPR32P1Q8NGA4 272 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 ACTRT1Q8TDG2 376 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 BLNKQ8WV28 456 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 ACOT12Q8WYK0 555 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 OR10C1Q96KK4 312 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 FAM19A4Q96LR4 140 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 SDHCQ99643 169 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-207ENST00000468384 GABARAPL3Q9BY60 117 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 RHOFQ9HBH0 211 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 RAB22AQ9UL26 194 aa2.73□□□□□ -1.97
HMGB1-207ENST00000468384 IGLV11-55A0A075B6I3 123 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 MUC21A0A0G2JKD1 596 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 A6NIN4 97 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 METTL15A6NJ78 407 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 ZNF98A6NK75 572 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 ZFP92A6NM28 416 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 CDC42EP2O14613 210 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 CA11O75493 328 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 UPK1BO75841 260 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 DCTN3O75935 186 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 YIF1AO95070 293 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 ZBTB25P24278 435 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 MYL9P24844 172 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 S100A3P33764 101 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 BAXQ07812 192 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 SMAGPQ0VAQ4 97 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 DHRS2Q13268 280 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 SP6Q3SY56 376 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 C10orf55Q5SWW7 151 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 DHFR2Q86XF0 187 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 FER1L6-AS1Q8NA97 138 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 C11orf72Q8NBR9 251 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 STOML3Q8TAV4 291 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 TWIST2Q8WVJ9 160 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 SLC25A46Q96AG3 418 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 GPX7Q96SL4 187 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-207ENST00000468384 TMEM109Q9BVC6 243 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 COMMD9Q9P000 198 aa2.72□□□□□ -1.97
HMGB1-207ENST00000468384 TMEM30CPA0ZSE6 113 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 FAM168BA1KXE4 195 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 BCL2L11O43521 198 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 DHRS3O75911 302 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 DHFRP00374 187 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 RCC1P18754 421 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-207ENST00000468384 DEFB1P60022 68 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 PSME3P61289 254 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 CDK6Q00534 326 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 PSG9Q00887 426 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 OR2F1Q13607 317 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 C9orf129Q5T035 196 aaKnown RBP2.71□□□□□ -1.98
HMGB1-207ENST00000468384 TEX43Q6ZNM6 134 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 FAM231DQ6ZW35 169 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 COMMD7Q86VX2 200 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 LGI3Q8N145 548 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 GATD1Q8NB37 220 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 OR2G3Q8NGZ4 309 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 DIRC1Q969H9 104 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 PTX4Q96A99 478 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 C16orf74Q96GX8 76 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 ZIM3Q96PE6 472 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 TEAD3Q99594 435 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 NIPSNAP1Q9BPW8 284 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 PECRQ9BY49 303 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 TMEM216Q9P0N5 145 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 ORC6Q9Y5N6 252 aa2.71□□□□□ -1.98
HMGB1-207ENST00000468384 F11RQ9Y624 299 aaKnown RBP2.71□□□□□ -1.98
HMGB1-207ENST00000468384 SMIM26A0A096LP01 95 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 IGKV1-12A0A0C4DH73 117 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 LOC107986453A0A1B0GWG9 222 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 H0Y9J4 135 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 HBZP02008 142 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 GIPP09681 153 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-207ENST00000468384 ALOX5APP20292 161 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 SNRPD3P62318 126 aaKnown RBP2.7□□□□□ -1.98
HMGB1-207ENST00000468384 S100A12P80511 92 aa2.7□□□□□ -1.98
HMGB1-207ENST00000468384 RPL19P84098 196 aaKnown RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms