RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 SOCS3O14543 225 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 APOHP02749 345 aaPredicted RBP8.89□□□□□ -0.99
USP54-209ENST00000464635 TYMSP04818 313 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 COX19Q49B96 90 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 LCN12Q6JVE5 192 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 OR4B1Q8NGF8 309 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 NRN1Q9NPD7 142 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 SIGLEC8Q9NYZ4 499 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 IL36BQ9NZH7 164 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 PSG8Q9UQ74 426 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 TMEM213A2RRL7 107 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 C19orf71A6NCJ1 209 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 NPIPB6E9PJ23 425 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 RAB5AP20339 215 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 ERVFC1-1P60608 527 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 GNG5P63218 68 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 FHL3Q13643 280 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 DEFB121Q5J5C9 76 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 IBA57Q5T440 356 aaKnown RBP8.88□□□□□ -0.99
USP54-209ENST00000464635 C9orf47Q6ZRZ4 202 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 GOLT1AQ6ZVE7 132 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 Q86TA4 180 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 FAM24BQ8N5W8 94 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 DPF1Q92782 380 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 LINC00479Q96M42 142 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 GFRA4Q9GZZ7 299 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 SAV1Q9H4B6 383 aaPredicted RBP8.88□□□□□ -0.99
USP54-209ENST00000464635 V9GYV3 84 aa8.88□□□□□ -0.99
USP54-209ENST00000464635 IGHV4OR15-8A0A075B7B6 117 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 A0A087WW49 117 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 TRAV8-2A0A0B4J237 113 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 OVOL1O14753 267 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 ID1P41134 155 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 FOXA3P55318 350 aaPredicted RBP8.87□□□□□ -0.99
USP54-209ENST00000464635 TM4SF20Q53R12 229 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 RASL11AQ6T310 242 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 OR1N2Q8NGR9 330 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 LINC00477Q96M19 166 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 MCRIP2Q9BUT9 160 aaKnown RBP8.87□□□□□ -0.99
USP54-209ENST00000464635 GPR61Q9BZJ8 451 aa8.87□□□□□ -0.99
USP54-209ENST00000464635 TRAV34A0A0B4J273 112 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 SMIM27A0A1W2PRY6 76 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 PGPEP1LA6NFU8 196 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 M0R3E3 92 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 CBLN1P23435 193 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 FAM3BP58499 235 aaPredicted RBP8.86□□□□□ -0.99
USP54-209ENST00000464635 OR11H1Q8NG94 326 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 FAM210BQ96KR6 192 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 C16orf92Q96LL3 132 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 PRR25Q96S07 402 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 SRD5A3Q9H8P0 318 aa8.86□□□□□ -0.99
USP54-209ENST00000464635 IGHV3OR16-8A0A075B7F1 116 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 TRAV25A0A0B4J276 109 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 C2orf70A6NJV1 201 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 A8MWL6 223 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 H3BTX0 84 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 ZNF207O43670 478 aaKnown RBP8.85□□□□□ -0.99
USP54-209ENST00000464635 GATCO43716 136 aaKnown RBP8.85□□□□□ -0.99
USP54-209ENST00000464635 NUDT10Q8NFP7 164 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 DAZAP1Q96EP5 407 aaKnown RBP8.85□□□□□ -0.99
USP54-209ENST00000464635 NUDT11Q96G61 164 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 NDFIP1Q9BT67 221 aa8.85□□□□□ -0.99
USP54-209ENST00000464635 SNRPCP09234 159 aaKnown RBP8.84□□□□□ -0.99
USP54-209ENST00000464635 CT45A10P0DMU9 189 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 MGST1P10620 155 aaKnown RBP8.84□□□□□ -0.99
USP54-209ENST00000464635 SYNJ2BPP57105 145 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 PAFAH1B2P68402 229 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 OR5I1Q13606 314 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 TCF24Q7RTU0 167 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 PRNTQ86SH4 94 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 OR9G4Q8NGQ1 327 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 DCANP1Q8TF63 244 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 TSKUQ8WUA8 353 aa8.84□□□□□ -0.99
USP54-209ENST00000464635 ZNF705GA8MUZ8 300 aaPredicted RBP8.83□□□□□ -1
USP54-209ENST00000464635 C1orf196B1AJZ1 125 aa8.83□□□□□ -1
USP54-209ENST00000464635 P01737 135 aa8.83□□□□□ -1
USP54-209ENST00000464635 RAB5BP61020 215 aa8.83□□□□□ -1
USP54-209ENST00000464635 C9orf66Q5T8R8 295 aa8.83□□□□□ -1
USP54-209ENST00000464635 Q6AWC8 147 aa8.83□□□□□ -1
USP54-209ENST00000464635 ATP5L2Q7Z4Y8 100 aa8.83□□□□□ -1
USP54-209ENST00000464635 GBGT1Q8N5D6 347 aa8.83□□□□□ -1
USP54-209ENST00000464635 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.83□□□□□ -1
USP54-209ENST00000464635 ODF3Q96PU9 254 aa8.83□□□□□ -1
USP54-209ENST00000464635 ASCL2Q99929 193 aa8.83□□□□□ -1
USP54-209ENST00000464635 B9D2Q9BPU9 175 aa8.83□□□□□ -1
USP54-209ENST00000464635 IGHV3-66A0A0C4DH42 116 aa8.82□□□□□ -1
USP54-209ENST00000464635 XKRY2A2RUG3 117 aa8.82□□□□□ -1
USP54-209ENST00000464635 K7EQG2 157 aa8.82□□□□□ -1
USP54-209ENST00000464635 CXCL1P09341 107 aa8.82□□□□□ -1
USP54-209ENST00000464635 ZNF138P52744 262 aa8.82□□□□□ -1
USP54-209ENST00000464635 RPS20P60866 119 aaKnown RBP8.82□□□□□ -1
USP54-209ENST00000464635 SNRPD3P62318 126 aaKnown RBP8.82□□□□□ -1
USP54-209ENST00000464635 SMUG1Q53HV7 270 aa8.82□□□□□ -1
USP54-209ENST00000464635 TMEM78Q5T7P6 136 aa8.82□□□□□ -1
USP54-209ENST00000464635 APRG1Q8IVJ8 170 aa8.82□□□□□ -1
USP54-209ENST00000464635 RNASE7Q9H1E1 156 aaKnown RBP8.82□□□□□ -1
USP54-209ENST00000464635 RPP21Q9H633 154 aaKnown RBP8.82□□□□□ -1
USP54-209ENST00000464635 NAT8BQ9UHF3 227 aa8.82□□□□□ -1
USP54-209ENST00000464635 RPH3ALQ9UNE2 315 aa8.82□□□□□ -1
USP54-209ENST00000464635 URGCP-MRPS24S4R325 110 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms