RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZNF471Q9BX82 626 aaPredicted RBP13.4□□□□□ -0.26
SHH-203ENST00000435425 OTORQ9NRC9 128 aa13.4□□□□□ -0.26
SHH-203ENST00000435425 TRAV12-3A0A0B4J271 114 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 PFDN1O60925 122 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 CXorf1O96002 111 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 ZNF726P1Q15940 193 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 FAM74A1Q5RGS3 127 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 C9orf47Q6ZRZ4 202 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 TMUB2Q71RG4 321 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 TMEM256Q8N2U0 113 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 CMTM2Q8TAZ6 248 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 ODF3Q96PU9 254 aa13.39□□□□□ -0.27
SHH-203ENST00000435425 CTXND1A0A1B0GTU2 59 aa13.38□□□□□ -0.27
SHH-203ENST00000435425 SPART-AS1P0CW21 52 aa13.38□□□□□ -0.27
SHH-203ENST00000435425 AZU1P20160 251 aa13.38□□□□□ -0.27
SHH-203ENST00000435425 TCTE3Q8IZS6 198 aa13.38□□□□□ -0.27
SHH-203ENST00000435425 RXFP4Q8TDU9 374 aa13.38□□□□□ -0.27
SHH-203ENST00000435425 YTHDF2Q9Y5A9 579 aaKnown RBP13.38□□□□□ -0.27
SHH-203ENST00000435425 DIRC3C9JPN6 131 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 RNASE4P34096 147 aaKnown RBP13.37□□□□□ -0.27
SHH-203ENST00000435425 C12orf74Q32Q52 190 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 FAM222AQ5U5X8 452 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 Q6ZTC4 211 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 Q8TAT8 98 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 PLA2G2EQ9NZK7 142 aa13.37□□□□□ -0.27
SHH-203ENST00000435425 KLK5Q9Y337 293 aaPredicted RBP13.37□□□□□ -0.27
SHH-203ENST00000435425 H7BYZ3 331 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 SLC25A5P05141 298 aaKnown RBP13.36□□□□□ -0.27
SHH-203ENST00000435425 GPX1P07203 203 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 ZNF138P52744 262 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 FGF8P55075 233 aaPredicted RBP13.36□□□□□ -0.27
SHH-203ENST00000435425 TAS2R60P59551 318 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 GNG5P63218 68 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 CD300CQ08708 224 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 BTN1A1Q13410 526 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 AKAP14Q86UN6 197 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 FAM19A4Q96LR4 140 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 C20orf144Q9BQM9 153 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 TMEM167BQ9NRX6 74 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 ZNF492Q9P255 531 aa13.36□□□□□ -0.27
SHH-203ENST00000435425 C7orf71A4D174 169 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 LGALSLQ3ZCW2 172 aaPredicted RBP13.35□□□□□ -0.27
SHH-203ENST00000435425 GOLT1AQ6ZVE7 132 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 NIPSNAP3BQ9BS92 247 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 TMPRSS5Q9H3S3 457 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 DKK2Q9UBU2 259 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 STARD9Q9P2P6 4700 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 CSMD3Q7Z407 3707 aa13.35□□□□□ -0.27
SHH-203ENST00000435425 RBAKDNA6NC62 111 aa13.34□□□□□ -0.27
SHH-203ENST00000435425 SUN5Q8TC36 379 aa13.34□□□□□ -0.27
SHH-203ENST00000435425 TRAV10A0A0B4J240 114 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 MAP1LC3B2A6NCE7 125 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 KLLNB2CW77 178 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 C11orf94C9JXX5 98 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 C1QBP02746 253 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 SEC11BP0C7V7 166 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 CRISP2P16562 243 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 FHITP49789 147 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 UBE2G2P60604 165 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 SUMO1P63165 101 aaKnown RBP13.33□□□□□ -0.28
SHH-203ENST00000435425 EIF5AP63241 154 aaKnown RBP13.33□□□□□ -0.28
SHH-203ENST00000435425 PRR9Q5T870 116 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 CCDC28AQ8IWP9 274 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 MAP1LC3BQ9GZQ8 125 aa13.33□□□□□ -0.28
SHH-203ENST00000435425 A0A1B0GVG6 124 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 TPT1P13693 172 aaKnown RBP13.32□□□□□ -0.28
SHH-203ENST00000435425 ZFAND2AQ8N6M9 145 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 FAM213BQ8TBF2 198 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 C2CD4CQ8TF44 421 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 C16orf74Q96GX8 76 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 SGK494Q96LW2 274 aa13.32□□□□□ -0.28
SHH-203ENST00000435425 TENM2Q9NT68 2774 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 DEFB131BA0A096LNP1 70 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 LCE6AA0A183 80 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 TEX48A0A1B0GUV7 120 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 IGLL5B9A064 214 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 DAD1P61803 113 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 Q6ZQT7 251 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 C5orf17Q8NAS9 161 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 TMED6Q8WW62 240 aa13.31□□□□□ -0.28
SHH-203ENST00000435425 TRAV8-1A0A0A6YYK1 113 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 A0A1B0GV50 99 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 PLAC8L1A1L4L8 177 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 GGTLC3B5MD39 225 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 ZNF324O75467 553 aaPredicted RBP13.3□□□□□ -0.28
SHH-203ENST00000435425 NMBP08949 121 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 HTN3P15516 51 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 TMEM263Q8WUH6 116 aaKnown RBP13.3□□□□□ -0.28
SHH-203ENST00000435425 PYGO2Q9BRQ0 406 aa13.3□□□□□ -0.28
SHH-203ENST00000435425 UMAD1C9J7I0 102 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 TCRAP04437 139 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 DEFB130BP0DP73 79 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 DEFB130AP0DP74 79 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 ZNF493Q6ZR52 646 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 ARL6IP6Q8N6S5 226 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 STOML3Q8TAV4 291 aa13.29□□□□□ -0.28
SHH-203ENST00000435425 RNASE8Q8TDE3 154 aaKnown RBP13.29□□□□□ -0.28
SHH-203ENST00000435425 A0A1W2PRE2 83 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 CBY3A6NI87 242 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 LYRM9A8MSI8 78 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms