RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 ZNRF2Q8NHG8 242 aa13.36□□□□□ -0.27
RIF1-204ENST00000430328 NTF4P34130 210 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 IGKV1D-43A0A0B4J1Z2 117 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 CFC1BP0CG36 223 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 CFC1P0CG37 223 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 CASC2Q6XLA1 102 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 TMEM213A2RRL7 107 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 TMEM14EPQ6UXP3 125 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 BUB3O43684 328 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 PFN1P07737 140 aaKnown RBP13.35□□□□□ -0.27
RIF1-204ENST00000430328 MRPL51Q4U2R6 128 aaKnown RBP13.35□□□□□ -0.27
RIF1-204ENST00000430328 MRPS18CQ9Y3D5 142 aaKnown RBP13.35□□□□□ -0.27
RIF1-204ENST00000430328 NBASA2RRP1 2371 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 RBBP6Q7Z6E9 1792 aaKnown RBP13.35□□□□□ -0.27
RIF1-204ENST00000430328 DEFB131AP59861 70 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 TMEM200BQ69YZ2 307 aa13.35□□□□□ -0.27
RIF1-204ENST00000430328 XIRP1Q702N8 1843 aaKnown RBP13.35□□□□□ -0.27
RIF1-204ENST00000430328 SPINK13Q1W4C9 94 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 PRR15LQ9BU68 103 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 IGHV4-4A0A075B6R2 117 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 IGLL1P15814 213 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 APOC4P55056 127 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 IGFL4Q6B9Z1 124 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 IGHV1-8P0DP01 117 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 MPLKIPQ8TAP9 179 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 TIMM17AQ99595 171 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 TEX22C9J3V5 150 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 HERV-K104P63124 156 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 HS3ST6Q96QI5 342 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 XCL2Q9UBD3 114 aa13.34□□□□□ -0.27
RIF1-204ENST00000430328 FAM240AA0A1B0GVK7 77 aa13.33□□□□□ -0.27
RIF1-204ENST00000430328 COX7B2Q8TF08 81 aa13.33□□□□□ -0.27
RIF1-204ENST00000430328 GREB1LQ9C091 1923 aaPredicted RBP13.33□□□□□ -0.28
RIF1-204ENST00000430328 NAV3Q8IVL0 2385 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 A0A0U1RQV1 116 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 H3BUX3 64 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 CLPSL2Q6UWE3 100 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 RNF183Q96D59 192 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 CCL25O15444 150 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 FOXE3Q13461 319 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 ZNF493Q6ZR52 646 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 ZNF492Q9P255 531 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 IGHV2-70P01814 119 aa13.33□□□□□ -0.28
RIF1-204ENST00000430328 IGKV4-1P06312 121 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 PSPNO60542 156 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 C8orf49Q96NF6 230 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 ZCCHC24Q8N2G6 241 aaKnown RBP13.32□□□□□ -0.28
RIF1-204ENST00000430328 ZNF503Q96F45 646 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 LINC00479Q96M42 142 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 REG4Q9BYZ8 158 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 PCDH15Q96QU1 1955 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 STRCQ7RTU9 1775 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 SAP25Q8TEE9 199 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 CYTL1Q9NRR1 136 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 SIGLEC9Q9Y336 463 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 IGHV3-38A0A0C4DH36 116 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 IGLL5B9A064 214 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 H0YGX0 51 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 C3orf56Q8N813 242 aa13.32□□□□□ -0.28
RIF1-204ENST00000430328 ETV2O00321 342 aaPredicted RBP13.31□□□□□ -0.28
RIF1-204ENST00000430328 H0YJW9 148 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 RPL18AQ02543 176 aaKnown RBP13.31□□□□□ -0.28
RIF1-204ENST00000430328 PRSS47A8MTI9 375 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 HGFACQ04756 655 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 LYNX1G3V0Z9 82 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 LYNX1P0DP58 116 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 SLC25A29Q8N8R3 303 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 MESP1Q9BRJ9 268 aa13.31□□□□□ -0.28
RIF1-204ENST00000430328 TFF1P04155 84 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 XCL1P47992 114 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 NRXN3Q9Y4C0 1643 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 ATP5G1P05496 136 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 AGRNO00468 2067 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 DENND4AQ7Z401 1863 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 BUB1B-PAK6H3BSN5 160 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 DYNAPQ8N1N2 210 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 OPRPNQ99935 248 aaPredicted RBP13.3□□□□□ -0.28
RIF1-204ENST00000430328 SIGLEC8Q9NYZ4 499 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 NDUFB8O95169 186 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 Q6ZWC4 215 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 SHANK2-AS3Q9BTD1 123 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 DEFB125Q8N687 156 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 ZNF837Q96EG3 531 aaPredicted RBP13.3□□□□□ -0.28
RIF1-204ENST00000430328 TRAV26-2A0A0B4J265 109 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 A0A1B0GUS0 222 aa13.3□□□□□ -0.28
RIF1-204ENST00000430328 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.29□□□□□ -0.28
RIF1-204ENST00000430328 C9orf106Q8NAJ2 232 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 IGF2BP2-AS1Q96M15 143 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 SPANXB1Q9NS25 103 aaPredicted RBP13.29□□□□□ -0.28
RIF1-204ENST00000430328 LAIR2Q6ISS4 152 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 LYZL4Q96KX0 146 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 KLK9Q9UKQ9 250 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 IGKV2D-24A0A075B6R9 120 aa13.29□□□□□ -0.28
RIF1-204ENST00000430328 ARID2Q68CP9 1835 aa13.28□□□□□ -0.28
RIF1-204ENST00000430328 COL22A1Q8NFW1 1626 aaPredicted RBP13.28□□□□□ -0.28
RIF1-204ENST00000430328 SH2D6Q7Z4S9 175 aa13.28□□□□□ -0.28
RIF1-204ENST00000430328 NYNRINQ9P2P1 1898 aaKnown RBP13.28□□□□□ -0.28
RIF1-204ENST00000430328 CR1LQ2VPA4 569 aa13.28□□□□□ -0.28
RIF1-204ENST00000430328 ZNF831Q5JPB2 1677 aa13.28□□□□□ -0.28
RIF1-204ENST00000430328 TRAV3A0A0B4J244 114 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms