RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 A0A096LPF7 62 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 ZNF324O75467 553 aaPredicted RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 SIX6O95475 246 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 IL15RAQ13261 267 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 CNPY1Q3B7I2 92 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 FAM122CQ6P4D5 195 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 THAP6Q8TBB0 222 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 ODF3Q96PU9 254 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 PFDN5Q99471 154 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 PYGO2Q9BRQ0 406 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 Q9H3A6 140 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 MRPS16Q9Y3D3 137 aaKnown RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 APOBP04114 4563 aaKnown RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 CDK2AP2O75956 126 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 SLC25A5P05141 298 aaKnown RBP7.97□□□□□ -1.13
USP4-204ENST00000416417 HIST1H1EP10412 219 aaKnown RBP7.97□□□□□ -1.13
USP4-204ENST00000416417 PVALBP20472 110 aaPredicted RBP7.97□□□□□ -1.13
USP4-204ENST00000416417 S100A11P31949 105 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 NHLH2Q02577 135 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 DAZ2Q13117 558 aaKnown RBP7.97□□□□□ -1.13
USP4-204ENST00000416417 ICAM4Q14773 271 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 MIR17HGQ75NE6 70 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 FAM19A4Q96LR4 140 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 VGLL1Q99990 258 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 SLC25A2Q9BXI2 301 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 MRPL16Q9NX20 251 aaKnown RBP7.97□□□□□ -1.13
USP4-204ENST00000416417 FUT9Q9Y231 359 aa7.97□□□□□ -1.13
USP4-204ENST00000416417 KLLNB2CW77 178 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 TTC32Q5I0X7 151 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 STX12Q86Y82 276 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 ZNF503Q96F45 646 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 UPK3BQ9BT76 320 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 NPCDR1Q9BY65 106 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 TMEM14CQ9P0S9 112 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 TNFRSF18Q9Y5U5 241 aa7.96□□□□□ -1.14
USP4-204ENST00000416417 ZNF253O75346 499 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 GPX1P07203 203 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 OR10J4P0C629 311 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 LINC00315P59091 139 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 HBG1P69891 147 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 HBG2P69892 147 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 EIF4E3Q8N5X7 224 aaKnown RBP7.95□□□□□ -1.14
USP4-204ENST00000416417 Q8TAT8 98 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 MRPL53Q96EL3 112 aaKnown RBP7.95□□□□□ -1.14
USP4-204ENST00000416417 FAM167A-AS1Q96KT0 104 aa7.95□□□□□ -1.14
USP4-204ENST00000416417 DNAH5Q8TE73 4624 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 FAM240BA0A1B0GVZ2 78 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 H3BNG1 76 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 EIF3GO75821 320 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP4-204ENST00000416417 LRRC37A5PQ49AS3 106 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 ZFAND2AQ8N6M9 145 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 ZNF680Q8NEM1 530 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 LINC00477Q96M19 166 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 OR5AC2Q9NZP5 309 aa7.94□□□□□ -1.14
USP4-204ENST00000416417 RGS13O14921 159 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 PAX4O43316 350 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 SPINK4O60575 86 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 MPDU1O75352 247 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 TCL1AP56279 114 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 ATP6V1FQ16864 119 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 ANXA2RQ3ZCQ2 193 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 MUC21Q5SSG8 566 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 OR5C1Q8NGR4 320 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 CHAC2Q8WUX2 184 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 PHYHIPLQ96FC7 376 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 AAMDCQ9H7C9 122 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 SCRT2Q9NQ03 307 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 PRELID1Q9Y255 219 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 H0YIZ8 118 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 NXPH4O95158 308 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 NBEAP1P0C6P0 100 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 CRISP2P16562 243 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 TMEM78Q5T7P6 136 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 C9orf47Q6ZRZ4 202 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 Q8N1X5 172 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 C8orf49Q96NF6 230 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 LINC00467Q9BRT7 94 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 OR51M1Q9H341 326 aa7.93□□□□□ -1.14
USP4-204ENST00000416417 IGHV1OR15-1A0A075B7D0 117 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 A0A1W2PPQ1 181 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 SIVA1O15304 175 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 PDE6HQ13956 83 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 Q6ZRN7 208 aaPredicted RBP7.92□□□□□ -1.14
USP4-204ENST00000416417 FXYD5Q96DB9 178 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 PAXXQ9BUH6 204 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 ZNF492Q9P255 531 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 ICOSQ9Y6W8 199 aa7.92□□□□□ -1.14
USP4-204ENST00000416417 PRAF2O60831 178 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 SFTA3P0C7M3 94 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 ST6GAL2Q96JF0 529 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 ARPC5LQ9BPX5 153 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 CCDC32Q9BV29 185 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 MDFICQ9P1T7 246 aa7.91□□□□□ -1.14
USP4-204ENST00000416417 E5RGE8 158 aa7.9□□□□□ -1.14
USP4-204ENST00000416417 OR7C2O60412 319 aa7.9□□□□□ -1.14
USP4-204ENST00000416417 BTF3P20290 206 aaKnown RBP7.9□□□□□ -1.14
USP4-204ENST00000416417 ZNF138P52744 262 aa7.9□□□□□ -1.14
USP4-204ENST00000416417 CRYBA4P53673 196 aa7.9□□□□□ -1.14
USP4-204ENST00000416417 RANP62826 216 aaKnown RBP7.9□□□□□ -1.14
USP4-204ENST00000416417 FHL2Q14192 279 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms