RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 M0R2Z0 102 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ISLRO14498 428 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 SYNGR2O43760 224 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 SSSCA1O60232 199 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 COX7A2P2O60397 106 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 CA2P00918 260 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 IGHMP01871 453 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 APOA2P02652 100 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ASAH2BP0C7U1 165 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 CECR9P0C854 216 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 CD164Q04900 197 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 KPRPQ5T749 579 aaPredicted RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 LYRM7Q5U5X0 104 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 Q6ZS49 121 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 S100A7AQ86SG5 101 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 LINC00596Q86U02 117 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 BOD1L2Q8IYS8 172 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TMEM251Q8N6I4 163 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TEX29Q8N6K0 151 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ATP6V0E2Q8NHE4 81 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 LMX1AQ8TE12 382 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TSKUQ8WUA8 353 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 CCL17Q92583 94 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 GALMQ96C23 342 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ARHGAP5-AS1Q96IT6 56 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TMEM147Q9BVK8 224 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TTTY10Q9BZA0 68 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 PBOV1Q9GZY1 135 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 OR2D2Q9H210 308 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 PSENENQ9NZ42 101 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ZNF391Q9UJN7 358 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 ERG28Q9UKR5 140 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 BOKQ9UMX3 212 aaPredicted RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 SOX21Q9Y651 276 aaPredicted RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 SPCS1Q9Y6A9 102 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 DICER1Q9UPY3 1922 aaKnown RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 OTOFQ9HC10 1997 aa2.59□□□□□ -2
VPS54-204ENST00000416400 BRWD3Q6RI45 1802 aa2.58□□□□□ -2
VPS54-204ENST00000416400 SBF2Q86WG5 1849 aa2.58□□□□□ -2
VPS54-204ENST00000416400 CITO14578 2027 aa2.58□□□□□ -2
VPS54-204ENST00000416400 DYSFO75923 2080 aa2.58□□□□□ -2
VPS54-204ENST00000416400 A0A1B0GXF2 115 aa2.58□□□□□ -2
VPS54-204ENST00000416400 A0A1W2PPM0 123 aa2.58□□□□□ -2
VPS54-204ENST00000416400 IZUMO1RA6ND01 250 aa2.58□□□□□ -2
VPS54-204ENST00000416400 OR4C46A6NHA9 309 aa2.58□□□□□ -2
VPS54-204ENST00000416400 C16orf90A8MZG2 172 aa2.58□□□□□ -2
VPS54-204ENST00000416400 H0Y980 276 aa2.58□□□□□ -2
VPS54-204ENST00000416400 NUPR1O60356 82 aa2.58□□□□□ -2
VPS54-204ENST00000416400 CST7O76096 145 aa2.58□□□□□ -2
VPS54-204ENST00000416400 IGLV7-43P04211 117 aa2.58□□□□□ -2
VPS54-204ENST00000416400 COX8AP10176 69 aa2.58□□□□□ -2
VPS54-204ENST00000416400 CCL1P22362 96 aa2.58□□□□□ -2
VPS54-204ENST00000416400 PRTN3P24158 256 aa2.58□□□□□ -2
VPS54-204ENST00000416400 FKBP2P26885 142 aaKnown RBP2.58□□□□□ -2
VPS54-204ENST00000416400 ZNF83P51522 516 aa2.58□□□□□ -2
VPS54-204ENST00000416400 RPL18Q07020 188 aaKnown RBP2.58□□□□□ -2
VPS54-204ENST00000416400 KRTAP13-2Q52LG2 175 aa2.58□□□□□ -2
VPS54-204ENST00000416400 ZFAND6Q6FIF0 208 aa2.58□□□□□ -2
VPS54-204ENST00000416400 C22orf39Q6P5X5 142 aa2.58□□□□□ -2
VPS54-204ENST00000416400 TMEM136Q6ZRR5 245 aa2.58□□□□□ -2
VPS54-204ENST00000416400 ATP5L2Q7Z4Y8 100 aa2.58□□□□□ -2
VPS54-204ENST00000416400 SPATA12Q7Z6I5 190 aa2.58□□□□□ -2
VPS54-204ENST00000416400 OR10X1Q8NGY0 326 aa2.58□□□□□ -2
VPS54-204ENST00000416400 OR4A5Q8NH83 315 aa2.58□□□□□ -2
VPS54-204ENST00000416400 GTSF1LQ9H1H1 148 aa2.58□□□□□ -2
VPS54-204ENST00000416400 NPVFQ9HCQ7 196 aa2.58□□□□□ -2
VPS54-204ENST00000416400 PATJQ8NI35 1801 aa2.58□□□□□ -2
VPS54-204ENST00000416400 SVILO95425 2214 aa2.57□□□□□ -2
VPS54-204ENST00000416400 A0A0G2JMZ2 1700 aa2.57□□□□□ -2
VPS54-204ENST00000416400 LRRC37A2A6NM11 1700 aa2.57□□□□□ -2
VPS54-204ENST00000416400 LRRC37AA6NMS7 1700 aa2.57□□□□□ -2
VPS54-204ENST00000416400 MUC21A0A0G2JKD1 596 aa2.57□□□□□ -2
VPS54-204ENST00000416400 MUC21A0A140T8X8 626 aa2.57□□□□□ -2
VPS54-204ENST00000416400 ODAMA1E959 279 aa2.57□□□□□ -2
VPS54-204ENST00000416400 GRIFINA4D1Z8 144 aa2.57□□□□□ -2
VPS54-204ENST00000416400 C17orf51A8MQB3 221 aa2.57□□□□□ -2
VPS54-204ENST00000416400 SYS1-DBNDD2H3BUS1 97 aa2.57□□□□□ -2
VPS54-204ENST00000416400 RER1O15258 196 aa2.57□□□□□ -2
VPS54-204ENST00000416400 SYNGR1O43759 233 aa2.57□□□□□ -2
VPS54-204ENST00000416400 LEPROTL1O95214 131 aa2.57□□□□□ -2
VPS54-204ENST00000416400 PPYP01298 95 aa2.57□□□□□ -2
VPS54-204ENST00000416400 SPINK8P0C7L1 97 aa2.57□□□□□ -2
VPS54-204ENST00000416400 G6PCP35575 357 aa2.57□□□□□ -2
VPS54-204ENST00000416400 CSN1S1P47710 185 aa2.57□□□□□ -2
VPS54-204ENST00000416400 PLCXD2Q0VAA5 305 aa2.57□□□□□ -2
VPS54-204ENST00000416400 KLRD1Q13241 179 aa2.57□□□□□ -2
VPS54-204ENST00000416400 KISS1Q15726 138 aa2.57□□□□□ -2
VPS54-204ENST00000416400 CLEC12BQ2HXU8 276 aa2.57□□□□□ -2
VPS54-204ENST00000416400 Q56UQ5 140 aa2.57□□□□□ -2
VPS54-204ENST00000416400 NMSQ5H8A3 153 aa2.57□□□□□ -2
VPS54-204ENST00000416400 OLIG3Q7RTU3 272 aa2.57□□□□□ -2
VPS54-204ENST00000416400 TMEM25Q86YD3 366 aa2.57□□□□□ -2
VPS54-204ENST00000416400 RPP25LQ8N5L8 163 aaKnown RBP2.57□□□□□ -2
VPS54-204ENST00000416400 OR8A1Q8NGG7 326 aa2.57□□□□□ -2
VPS54-204ENST00000416400 ITLN2Q8WWU7 325 aaPredicted RBP2.57□□□□□ -2
VPS54-204ENST00000416400 ADAT3Q96EY9 351 aaPredicted RBP2.57□□□□□ -2
VPS54-204ENST00000416400 OR4C12Q96R67 309 aa2.57□□□□□ -2
VPS54-204ENST00000416400 ANAPC13Q9BS18 74 aa2.57□□□□□ -2
VPS54-204ENST00000416400 HES4Q9HCC6 221 aa2.57□□□□□ -2
VPS54-204ENST00000416400 FAM60AQ9NP50 221 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms